14 items (Natrinema sp. J72) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NJ7G_0008	Dihydrolipoamide dehydrogenase. (488 aa)
	NJ7G_0107	acyl-CoA dehydrogenase domain-containing protein. (387 aa)
	NJ7G_0204	Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family. (503 aa)
	NJ7G_0476	Tryptophanase. (459 aa)
	NJ7G_0784	Propanoyl-CoA C-acyltransferase. (392 aa)
	NJ7G_0840	FAD-dependent pyridine nucleotide-disulfide oxidoreductase. (127 aa)
	NJ7G_1123	Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family. (493 aa)
	NJ7G_1141	Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family. (505 aa)
	NJ7G_1947	Aldehyde Dehydrogenase. (510 aa)
	NJ7G_2315	Propanoyl-CoA C-acyltransferase. (436 aa)
	NJ7G_3393	propanoyl-CoA C-acyltransferase. (376 aa)
	NJ7G_3395	Propanoyl-CoA C-acyltransferase. (385 aa)
	katG	Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (712 aa)
	NJ7G_3667	Propanoyl-CoA C-acyltransferase. (388 aa)

Your Current Organism:

Natrinema sp. J72

NCBI taxonomy Id: 406552
Other names: N. sp. J7-2, Natrinema sp. J7-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
NJ7G_0008	NJ7G_0107	Dihydrolipoamide dehydrogenase.	acyl-CoA dehydrogenase domain-containing protein.	0.919
NJ7G_0008	NJ7G_0840	Dihydrolipoamide dehydrogenase.	FAD-dependent pyridine nucleotide-disulfide oxidoreductase.	0.910
NJ7G_0107	NJ7G_0008	acyl-CoA dehydrogenase domain-containing protein.	Dihydrolipoamide dehydrogenase.	0.919
NJ7G_0107	NJ7G_0784	acyl-CoA dehydrogenase domain-containing protein.	Propanoyl-CoA C-acyltransferase.	0.533
NJ7G_0107	NJ7G_0840	acyl-CoA dehydrogenase domain-containing protein.	FAD-dependent pyridine nucleotide-disulfide oxidoreductase.	0.919
NJ7G_0107	NJ7G_2315	acyl-CoA dehydrogenase domain-containing protein.	Propanoyl-CoA C-acyltransferase.	0.533
NJ7G_0107	NJ7G_3393	acyl-CoA dehydrogenase domain-containing protein.	propanoyl-CoA C-acyltransferase.	0.549
NJ7G_0107	NJ7G_3395	acyl-CoA dehydrogenase domain-containing protein.	Propanoyl-CoA C-acyltransferase.	0.549
NJ7G_0107	NJ7G_3667	acyl-CoA dehydrogenase domain-containing protein.	Propanoyl-CoA C-acyltransferase.	0.533
NJ7G_0784	NJ7G_0107	Propanoyl-CoA C-acyltransferase.	acyl-CoA dehydrogenase domain-containing protein.	0.533
NJ7G_0784	NJ7G_2315	Propanoyl-CoA C-acyltransferase.	Propanoyl-CoA C-acyltransferase.	0.602
NJ7G_0784	NJ7G_3393	Propanoyl-CoA C-acyltransferase.	propanoyl-CoA C-acyltransferase.	0.639
NJ7G_0784	NJ7G_3395	Propanoyl-CoA C-acyltransferase.	Propanoyl-CoA C-acyltransferase.	0.639
NJ7G_0784	NJ7G_3667	Propanoyl-CoA C-acyltransferase.	Propanoyl-CoA C-acyltransferase.	0.631
NJ7G_0840	NJ7G_0008	FAD-dependent pyridine nucleotide-disulfide oxidoreductase.	Dihydrolipoamide dehydrogenase.	0.910
NJ7G_0840	NJ7G_0107	FAD-dependent pyridine nucleotide-disulfide oxidoreductase.	acyl-CoA dehydrogenase domain-containing protein.	0.919
NJ7G_2315	NJ7G_0107	Propanoyl-CoA C-acyltransferase.	acyl-CoA dehydrogenase domain-containing protein.	0.533
NJ7G_2315	NJ7G_0784	Propanoyl-CoA C-acyltransferase.	Propanoyl-CoA C-acyltransferase.	0.602
NJ7G_2315	NJ7G_3393	Propanoyl-CoA C-acyltransferase.	propanoyl-CoA C-acyltransferase.	0.639
NJ7G_2315	NJ7G_3395	Propanoyl-CoA C-acyltransferase.	Propanoyl-CoA C-acyltransferase.	0.638