35 items (Natrinema sp. J72) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NJ7G_0116	3-hydroxyacyl-CoA dehydrogenase. (350 aa)
	NJ7G_0153	Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (265 aa)
	NJ7G_0680	Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (234 aa)
	NJ7G_0783	Hypothetical protein. (507 aa)
	NJ7G_0784	Propanoyl-CoA C-acyltransferase. (392 aa)
	NJ7G_1135	Hydroxymethylglutaryl-CoA synthase. (445 aa)
	NJ7G_1208	Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein. (527 aa)
	NJ7G_1209	Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit. (288 aa)
	NJ7G_1486	MaoC domain protein dehydratase. (212 aa)
	NJ7G_1489	Hypothetical protein. (174 aa)
	NJ7G_1490	Poly-hydroxyalkanoic acid synthase, class III, PhaC subunit. (451 aa)
	NJ7G_1744	Acetolactate synthase, large subunit, biosynthetic type. (594 aa)
	NJ7G_1745	Acetolactate synthase, small subunit. (220 aa)
	NJ7G_1902	3-hydroxyacyl-CoA dehydrogenase NAD-binding protein. (287 aa)
	NJ7G_1940	Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (436 aa)
	NJ7G_1943	Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (439 aa)
	NJ7G_1949	Thiamine pyrophosphate central domain-containing protein; Belongs to the TPP enzyme family. (548 aa)
	NJ7G_2307	3-oxoadipate CoA-transferase. (303 aa)
	NJ7G_2308	Coenzyme A transferase. (251 aa)
	NJ7G_2312	Thiamine pyrophosphate central domain-containing protein; Belongs to the TPP enzyme family. (547 aa)
	NJ7G_2315	Propanoyl-CoA C-acyltransferase. (436 aa)
	NJ7G_2316	Hypothetical protein. (475 aa)
	NJ7G_2903	Asp/Glu/hydantoin racemase. (241 aa)
	NJ7G_3002	Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (288 aa)
	NJ7G_3393	propanoyl-CoA C-acyltransferase. (376 aa)
	NJ7G_3395	Propanoyl-CoA C-acyltransferase. (385 aa)
	NJ7G_3493	Fumarate reductase/succinate dehydrogenase flavoprotein domain protein. (626 aa)
	NJ7G_3504	Succinate dehydrogenase, cytochrome b556 subunit. (143 aa)
	NJ7G_3505	Succinate dehydrogenase, subunit D. (121 aa)
	NJ7G_3506	Succinate dehydrogenase and fumarate reductase iron-sulfur protein. (290 aa)
	NJ7G_3507	Succinate dehydrogenase or fumarate reductase, flavoprotein subunit. (612 aa)
	NJ7G_3586	MaoC domain protein dehydratase. (141 aa)
	NJ7G_3606	Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein. (634 aa)
	NJ7G_3607	Pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit. (311 aa)
	NJ7G_3667	Propanoyl-CoA C-acyltransferase. (388 aa)

Your Current Organism:

Natrinema sp. J72

NCBI taxonomy Id: 406552
Other names: N. sp. J7-2, Natrinema sp. J7-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
NJ7G_0116	NJ7G_0153	3-hydroxyacyl-CoA dehydrogenase.	Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.992
NJ7G_0116	NJ7G_0680	3-hydroxyacyl-CoA dehydrogenase.	Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.988
NJ7G_0116	NJ7G_0783	3-hydroxyacyl-CoA dehydrogenase.	Hypothetical protein.	0.905
NJ7G_0116	NJ7G_0784	3-hydroxyacyl-CoA dehydrogenase.	Propanoyl-CoA C-acyltransferase.	0.976
NJ7G_0116	NJ7G_1135	3-hydroxyacyl-CoA dehydrogenase.	Hydroxymethylglutaryl-CoA synthase.	0.900
NJ7G_0116	NJ7G_1902	3-hydroxyacyl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase NAD-binding protein.	0.904
NJ7G_0116	NJ7G_2315	3-hydroxyacyl-CoA dehydrogenase.	Propanoyl-CoA C-acyltransferase.	0.976
NJ7G_0116	NJ7G_2316	3-hydroxyacyl-CoA dehydrogenase.	Hypothetical protein.	0.905
NJ7G_0116	NJ7G_3393	3-hydroxyacyl-CoA dehydrogenase.	propanoyl-CoA C-acyltransferase.	0.976
NJ7G_0116	NJ7G_3395	3-hydroxyacyl-CoA dehydrogenase.	Propanoyl-CoA C-acyltransferase.	0.976
NJ7G_0116	NJ7G_3504	3-hydroxyacyl-CoA dehydrogenase.	Succinate dehydrogenase, cytochrome b556 subunit.	0.422
NJ7G_0116	NJ7G_3667	3-hydroxyacyl-CoA dehydrogenase.	Propanoyl-CoA C-acyltransferase.	0.976
NJ7G_0153	NJ7G_0116	Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-CoA dehydrogenase.	0.992
NJ7G_0153	NJ7G_0680	Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.945
NJ7G_0153	NJ7G_0784	Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	Propanoyl-CoA C-acyltransferase.	0.779
NJ7G_0153	NJ7G_1486	Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	MaoC domain protein dehydratase.	0.922
NJ7G_0153	NJ7G_1902	Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-CoA dehydrogenase NAD-binding protein.	0.993
NJ7G_0153	NJ7G_2315	Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	Propanoyl-CoA C-acyltransferase.	0.779
NJ7G_0153	NJ7G_3393	Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	propanoyl-CoA C-acyltransferase.	0.780
NJ7G_0153	NJ7G_3395	Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	Propanoyl-CoA C-acyltransferase.	0.780