STRINGSTRING
XNC1_1367 XNC1_1367 XNC1_1376 XNC1_1376 RtxD RtxD XNC1_1378 XNC1_1378 XNC1_3818 XNC1_3818 XNC1_3819 XNC1_3819 XNC1_3820 XNC1_3820 XNC1_3823 XNC1_3823 XNC1_4021 XNC1_4021 XNC1_4022 XNC1_4022 XNC1_4023 XNC1_4023 XNC1_4024 XNC1_4024 XNC1_4025 XNC1_4025 XNC1_4501 XNC1_4501 XNC1_4502 XNC1_4502 XNC1_4503 XNC1_4503 XNC1_4504 XNC1_4504 XNC1_4505 XNC1_4505
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
XNC1_1367Complete genome; segment 14/17. (312 aa)
XNC1_1376ABC transporter RTX toxin; Function of strongly homologous gene; enzyme. (709 aa)
RtxDRTX toxin ABC transporter protein RtxD; Function of strongly homologous gene; transporter. (475 aa)
XNC1_1378RTX toxin ABC transporter; Function of strongly homologous gene; enzyme. (685 aa)
XNC1_3818Hypothetical protein. (146 aa)
XNC1_3819Hypothetical protein. (240 aa)
XNC1_3820Colicin V secretion/processing ATP-binding protein cvaB (fragment). (189 aa)
XNC1_3823Transposase (fragment); Gene remnant; enzyme. (510 aa)
XNC1_4021Alkaline protease secretion protein aprF. (465 aa)
XNC1_4022Alkaline protease secretion protein aprE. (445 aa)
XNC1_4023Alkaline protease secretion ATP-binding protein aprD. (598 aa)
XNC1_4024Alkaline proteinase inhibitor precursor (PrtA-specific inhibitor) (fragment). (110 aa)
XNC1_4025Secreted alkaline metalloproteinase. (478 aa)
XNC1_4501Hypothetical protein. (52 aa)
XNC1_4502Putative Radical SAM. (392 aa)
XNC1_4503Hypothetical protein; putative exported protein. (301 aa)
XNC1_4504Putative Colicin V secretion protein; Doubtful CDS; putative factor. (425 aa)
XNC1_4505Colicin V secretion/processing ATP-binding protein cvaB; Function of strongly homologous gene; enzyme. (701 aa)
Your Current Organism:
Xenorhabdus nematophila
NCBI taxonomy Id: 406817
Other names: X. nematophila ATCC 19061, Xenorhabdus nematophila ATCC 19061, Xenorhabdus nematophila str. ATCC 19061, Xenorhabdus nematophila strain ATCC 19061
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