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ydiJ ydiJ XNC1_2116 XNC1_2116 XNC1_2117 XNC1_2117 dld dld nqrF nqrF mnmC mnmC hmp hmp XNC1_3581 XNC1_3581 dusC dusC sdhA sdhA ubiH ubiH lpd lpd ilvI ilvI XNC1_0811 XNC1_0811 dusB dusB XNC1_0653 XNC1_0653 frdA frdA XNC1_0577 XNC1_0577 ubiF ubiF yeaX yeaX ytfL ytfL XNC1_0449 XNC1_0449 XNC1_0446 XNC1_0446 cysJ cysJ nirB nirB dusA dusA XNC1_4018 XNC1_4018 XNC1_4269 XNC1_4269 gor gor paaE paaE XNC1_0012 XNC1_0012 gidA gidA sthA sthA murB murB XNC1_0368 XNC1_0368 XNC1_0445 XNC1_0445 yegH yegH ybeX ybeX XNC1_1266 XNC1_1266 betA betA visC visC xcnE xcnE
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
ydiJPutative oxidase, with FAD-binding domains. (1023 aa)
XNC1_2116Putative flavoprotein involved in K+ transport; Doubtful CDS; putative factor. (419 aa)
XNC1_2117Conserved hypothetical protein. (96 aa)
dldD-lactate dehydrogenase, NADH-independent, FAD-binding domain; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family. (578 aa)
nqrFNa(+)-translocating NADH-quinone reductase subunit F; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway. (408 aa)
mnmCPutative peptidase; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. (687 aa)
hmpBifunctional: nitric oxide dioxygenase (N-terminal); Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily. (396 aa)
XNC1_3581Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the TPP enzyme family. (581 aa)
dusCtRNA-dihydrouridine synthase C; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily. (324 aa)
sdhASuccinate dehydrogenase, catalytic and NAD/flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (588 aa)
ubiH2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding. (395 aa)
lpdDihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes. (475 aa)
ilvIAcetolactate synthase III, valine-sensitive, large subunit. (575 aa)
XNC1_08114-hydroxyphenylacetate 3-monooxygenase, oxygenase component (4-HPA 3-monooxygenase large component) (4-HPA 3-hydroxylase). (531 aa)
dusBtRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (296 aa)
XNC1_0653Putative Cytochrome-c oxidase. (582 aa)
frdAFumarate reductase, anaerobic, catalytic and NAD/flavoprotein subunit. (598 aa)
XNC1_0577Hypothetical protein. (113 aa)
ubiF2-octoprenyl-3-methyl-6-methoxy-1, 4-benzoquinone hydroxylase. (397 aa)
yeaXCarnitine monooxygenase reductase subunit; Converts carnitine to trimethylamine and malic semialdehyde. (321 aa)
ytfLPutative hemolysin-related membrane protein with CBS regulatory domain. (443 aa)
XNC1_0449Putative 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component (4-HPA 3-monooxygenase large component) (4-HPA 3-hydroxylase). (477 aa)
XNC1_0446Putative 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component (4-HPA 3-monooxygenase large component) (4-HPA 3-hydroxylase). (477 aa)
cysJSulfite reductase, alpha subunit (flavoprotein); Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. Belongs to the NADPH-dependent sulphite reductase flavoprotein subunit CysJ family. In the N-terminal section; belongs to the flavodoxin family. (606 aa)
nirBNitrite reductase, large subunit, nucleotide-binding; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (850 aa)
dusAtRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. (342 aa)
XNC1_4018Conserved hypothetical protein. (563 aa)
XNC1_4269Hypothetical protein. (94 aa)
gorGlutathione oxidoreductase, nucleotide-binding. (451 aa)
paaERing-1,2-phenylacetyl-CoA epoxidase subunit PaaE; Putative phenylacetic acid degradation protein with NADP-linked, 2Fe-2S ferredoxin-like and riboflavin synthase-like domains. (372 aa)
XNC1_0012Putative monooxygenase, flavin-binding family. (482 aa)
gidAGlucose-inhibited division protein, oxidoreductase-like with FAD/NAD(P)-binding domain; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. (618 aa)
sthASoluble pyridine nucleotide transhydrogenase; Conversion of NADPH, generated by peripheral catabolic pathways, to NADH, which can enter the respiratory chain for energy generation; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. (465 aa)
murBUDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding; Cell wall formation. (346 aa)
XNC1_0368Acetolactate synthase isozyme II large subunit (AHAS-II) (Acetohydroxy-acid synthase II large subunit) (ALS-II). (548 aa)
XNC1_0445Hypothetical protein. (405 aa)
yegHPutative transmembrane protein. (526 aa)
ybeXPutative integral membrane protein with CBS regulatory domain. (292 aa)
XNC1_1266Conserved hypothetical protein. (429 aa)
betACholine dehydrogenase, a flavoprotein; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. (560 aa)
visCPutative monooxygenase, FAD/NAD(P)-binding domain. (410 aa)
xcnEAcyl-CoA dehydrogenase involved in xenocoumacin synthesis; Function experimentally demonstrated in the studied strain; enzyme. (383 aa)
Your Current Organism:
Xenorhabdus nematophila
NCBI taxonomy Id: 406817
Other names: X. nematophila ATCC 19061, Xenorhabdus nematophila ATCC 19061, Xenorhabdus nematophila str. ATCC 19061, Xenorhabdus nematophila strain ATCC 19061
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