STRINGSTRING
XNC1_0093 XNC1_0093 metJ metJ XNC1_0542 XNC1_0542 seqA seqA XNC1_1454 XNC1_1454 putA putA XNC1_2221 XNC1_2221 XNC1_2391 XNC1_2391 XNC1_3900 XNC1_3900 XNC1_4629 XNC1_4629
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
XNC1_0093Conserved hypothetical protein. (107 aa)
metJTranscriptional repressor for methionine biosynthesis (MetJ family); This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis; Belongs to the MetJ family. (105 aa)
XNC1_0542Conserved hypothetical protein. (89 aa)
seqANegative modulator of replication initiation; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated. (177 aa)
XNC1_1454Putative ABC-type transport system. (92 aa)
putAMultifunctional: transcriptional repressor of proline utilization; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. (1326 aa)
XNC1_2221Conserved hypothetical protein. (90 aa)
XNC1_2391Conserved hypothetical protein. (118 aa)
XNC1_3900Conserved hypothetical protein. (97 aa)
XNC1_4629Conserved hypothetical protein. (92 aa)
Your Current Organism:
Xenorhabdus nematophila
NCBI taxonomy Id: 406817
Other names: X. nematophila ATCC 19061, Xenorhabdus nematophila ATCC 19061, Xenorhabdus nematophila str. ATCC 19061, Xenorhabdus nematophila strain ATCC 19061
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