STRINGSTRING
XNC1_0558 XNC1_0558 XNC1_0575 XNC1_0575 XNC1_0594 XNC1_0594 XNC1_0599 XNC1_0599 XNC1_0600 XNC1_0600 XNC1_0695 XNC1_0695 XNC1_0714 XNC1_0714 XNC1_0734 XNC1_0734 XNC1_0776 XNC1_0776 XNC1_0778 XNC1_0778 XNC1_0803 XNC1_0803 XNC1_0807 XNC1_0807 XNC1_0841 XNC1_0841 XNC1_0842 XNC1_0842 XNC1_0863 XNC1_0863 XNC1_0869 XNC1_0869 XNC1_0870 XNC1_0870 XNC1_0915 XNC1_0915 XNC1_0962 XNC1_0962 XNC1_1017 XNC1_1017 XNC1_1021 XNC1_1021 XNC1_1200 XNC1_1200 XNC1_1608 XNC1_1608 XNC1_1610 XNC1_1610 XNC1_1667 XNC1_1667 XNC1_1668 XNC1_1668 XNC1_1739 XNC1_1739 XNC1_1783 XNC1_1783 XNC1_1802 XNC1_1802 XNC1_1804 XNC1_1804 XNC1_1816 XNC1_1816 rnt rnt XNC1_1902 XNC1_1902 XNC1_1905 XNC1_1905 XNC1_1914 XNC1_1914 XNC1_1962 XNC1_1962 XNC1_1978 XNC1_1978 XNC1_1995 XNC1_1995 XNC1_2002 XNC1_2002 XNC1_0016 XNC1_0016 XNC1_0231 XNC1_0231 XNC1_0237 XNC1_0237 XNC1_0260 XNC1_0260 orn orn XNC1_0527 XNC1_0527 XNC1_2004 XNC1_2004 XNC1_2005 XNC1_2005 XNC1_2017 XNC1_2017 XNC1_2047 XNC1_2047 XNC1_2091 XNC1_2091 XNC1_2092 XNC1_2092 XNC1_2093 XNC1_2093 ruvC ruvC XNC1_2170 XNC1_2170 rnd rnd XNC1_2217 XNC1_2217 XNC1_2286 XNC1_2286 XNC1_2394 XNC1_2394 XNC1_2407 XNC1_2407 XNC1_2423 XNC1_2423 XNC1_2539 XNC1_2539 XNC1_2611 XNC1_2611 XNC1_2637 XNC1_2637 XNC1_2641 XNC1_2641 sbcB sbcB XNC1_2865 XNC1_2865 XNC1_2869 XNC1_2869 XNC1_2939 XNC1_2939 XNC1_2994 XNC1_2994 XNC1_3002 XNC1_3002 XNC1_3007 XNC1_3007 XNC1_3010 XNC1_3010 XNC1_3019 XNC1_3019 XNC1_3200 XNC1_3200 XNC1_3201 XNC1_3201 XNC1_3224 XNC1_3224 XNC1_3235 XNC1_3235 XNC1_3237 XNC1_3237 XNC1_3258 XNC1_3258 XNC1_3328 XNC1_3328 XNC1_3513 XNC1_3513 XNC1_3526 XNC1_3526 XNC1_3590 XNC1_3590 XNC1_3629 XNC1_3629 XNC1_3698 XNC1_3698 rnhA rnhA dnaQ dnaQ XNC1_3754 XNC1_3754 XNC1_3825 XNC1_3825 XNC1_3826 XNC1_3826 XNC1_3913 XNC1_3913 rnhB rnhB XNC1_4233 XNC1_4233 XNC1_4234 XNC1_4234 XNC1_4294 XNC1_4294 XNC1_4320 XNC1_4320 XNC1_4322 XNC1_4322 polA polA XNC1_4382 XNC1_4382 XNC1_4383 XNC1_4383 XNC1_4387 XNC1_4387 XNC1_4405 XNC1_4405 XNC1_4407 XNC1_4407 XNC1_4531 XNC1_4531 XNC1_4535 XNC1_4535 XNC1_4581 XNC1_4581 XNC1_4584 XNC1_4584 XNC1_4639 XNC1_4639 XNC1_4640 XNC1_4640
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
XNC1_0558Transposase. (136 aa)
XNC1_0575Transposase (fragment). (153 aa)
XNC1_0594Transposase (fragment). (227 aa)
XNC1_0599Transposase. (346 aa)
XNC1_0600Transposase. (346 aa)
XNC1_0695Transposase. (231 aa)
XNC1_0714Transposase. (344 aa)
XNC1_0734Transposase (fragment). (162 aa)
XNC1_0776Transposase. (134 aa)
XNC1_0778Transposase (fragment). (109 aa)
XNC1_0803Gene 55 protein (fragment) (modular protein). (137 aa)
XNC1_0807Transposase (fragment). (84 aa)
XNC1_0841Transposase. (278 aa)
XNC1_0842Transposase (fragment). (153 aa)
XNC1_0863Transposase. (298 aa)
XNC1_0869Putative Transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (58 aa)
XNC1_0870Putative Transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (110 aa)
XNC1_0915Conserved hypothetical protein. (290 aa)
XNC1_0962Transposase. (345 aa)
XNC1_1017Transposase (fragment). (86 aa)
XNC1_1021Transposase (fragment); Gene remnant; enzyme. (316 aa)
XNC1_1200Hypothetical protein. (260 aa)
XNC1_1608Transposase. (344 aa)
XNC1_1610Transposase (fragment). (257 aa)
XNC1_1667Conserved hypothetical protein. (58 aa)
XNC1_1668Putative transposase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (139 aa)
XNC1_1739Transposase. (318 aa)
XNC1_1783Transposase. (514 aa)
XNC1_1802Transposase (fragment). (94 aa)
XNC1_1804Hypothetical protein. (114 aa)
XNC1_1816Transposase. (266 aa)
rntRNase T, degrades tRNA, has exonuclease and ssDNAse activity; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. (211 aa)
XNC1_1902Hypothetical protein. (115 aa)
XNC1_1905Transposase. (348 aa)
XNC1_1914Transposase. (335 aa)
XNC1_1962Transposase (fragment). (162 aa)
XNC1_1978Transposase. (136 aa)
XNC1_1995Transposase. (136 aa)
XNC1_2002TnpA-like protein. (329 aa)
XNC1_0016Transposase. (346 aa)
XNC1_0231Transposase. (231 aa)
XNC1_0237Hypothetical protein. (119 aa)
XNC1_0260Transposase. (231 aa)
ornOligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. (181 aa)
XNC1_0527Transposase. (266 aa)
XNC1_2004Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (58 aa)
XNC1_2005Hypothetical protein. (115 aa)
XNC1_2017Transposase (fragment). (128 aa)
XNC1_2047Transposase (fragment). (63 aa)
XNC1_2091Putative transposase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (115 aa)
XNC1_2092Conserved hypothetical protein. (58 aa)
XNC1_2093Transposase (fragment). (174 aa)
ruvCHolliday junction nuclease; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (173 aa)
XNC1_2170Transposase. (231 aa)
rndRNase D, processes tRNA precursor; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. (379 aa)
XNC1_2217Conserved hypothetical protein. (58 aa)
XNC1_2286Transposase (fragment). (73 aa)
XNC1_2394Transposase (fragment). (74 aa)
XNC1_2407Transposase. (204 aa)
XNC1_2423Transposase (fragment); Gene remnant; enzyme. (346 aa)
XNC1_2539Putative invasin (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (85 aa)
XNC1_2611Transposase (fragment). (135 aa)
XNC1_2637Conserved hypothetical protein. (58 aa)
XNC1_2641Transposase (fragment); Gene remnant; enzyme. (319 aa)
sbcBExonuclease I, 3'-> 5'-specific; deoxyribophosphodiesterase. (476 aa)
XNC1_2865Transposase. (301 aa)
XNC1_2869Transposase. (275 aa)
XNC1_2939Transposase. (136 aa)
XNC1_2994Transposase. (335 aa)
XNC1_3002Transposase. (136 aa)
XNC1_3007Transposase TnpA-like protein; Function of strongly homologous gene; enzyme. (329 aa)
XNC1_3010Transposase (fragment). (249 aa)
XNC1_3019Conserved hypothetical protein. (82 aa)
XNC1_3200Putative transposase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (115 aa)
XNC1_3201Putative transposase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (58 aa)
XNC1_3224Transposase (fragment). (84 aa)
XNC1_3235Gene 55 protein (fragment) (modular protein). (141 aa)
XNC1_3237Transposase (fragment). (146 aa)
XNC1_3258Integrase, catalytic domain (Fragment) (fragment). (147 aa)
XNC1_3328Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (263 aa)
XNC1_3513Putative IS element; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin. (124 aa)
XNC1_3526Putative integrase protein (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin. (164 aa)
XNC1_3590Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (136 aa)
XNC1_3629Transposase (fragment). (115 aa)
XNC1_3698Conserved hypothetical protein. (84 aa)
rnhARNase HI, degrades RNA of DNA-RNA hybrids; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (156 aa)
dnaQDNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (249 aa)
XNC1_3754Transposase (fragment); Gene remnant; enzyme. (163 aa)
XNC1_3825Hypothetical protein. (115 aa)
XNC1_3826Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (55 aa)
XNC1_3913Putative transposase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (129 aa)
rnhBRNAse HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (196 aa)
XNC1_4233Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (254 aa)
XNC1_4234Transposase; Function of strongly homologous gene; enzyme. (346 aa)
XNC1_4294Transposase (fragment). (235 aa)
XNC1_4320Transposase (fragment). (102 aa)
XNC1_4322Putative transposase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (144 aa)
polAMultifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (930 aa)
XNC1_4382Conserved hypothetical protein. (58 aa)
XNC1_4383Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (115 aa)
XNC1_4387Transposase. (336 aa)
XNC1_4405Transposase (fragment); Gene remnant; enzyme. (313 aa)
XNC1_4407Transposase; Function of strongly homologous gene; enzyme. (273 aa)
XNC1_4531Transposase. (136 aa)
XNC1_4535Transposase; Function of strongly homologous gene; enzyme. (290 aa)
XNC1_4581Transposase (fragment). (244 aa)
XNC1_4584Transposase. (231 aa)
XNC1_4639Transposase(fragment); Gene remnant; enzyme. (178 aa)
XNC1_4640Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (290 aa)
Your Current Organism:
Xenorhabdus nematophila
NCBI taxonomy Id: 406817
Other names: X. nematophila ATCC 19061, Xenorhabdus nematophila ATCC 19061, Xenorhabdus nematophila str. ATCC 19061, Xenorhabdus nematophila strain ATCC 19061
Server load: low (26%) [HD]