(10 nodes) mRNA decay by 5 to 3 exoribonuclease network (Capsicum annuum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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Your Input:
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (119 aa)
	T459_01880	mRNA-decapping enzyme-like protein. (367 aa)
	LSM1-2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
	T459_29881	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family. (532 aa)
	T459_15612	mRNA-decapping enzyme subunit 2. (302 aa)
	T459_18051	mRNA-decapping enzyme-like protein. (373 aa)
	T459_25127	DEAD-box ATP-dependent RNA helicase 6; Belongs to the DEAD box helicase family. (475 aa)
	T459_21774	DEAD-box ATP-dependent RNA helicase 6; Belongs to the DEAD box helicase family. (473 aa)
	LSM1-3	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (149 aa)
	T459_06120	DUF295 domain-containing protein. (510 aa)

Your Current Organism:

Capsicum annuum

NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	LSM1-2	A0A1U8ECW6	A0A1U8FUD8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.901
LSM1	LSM1-3	A0A1U8ECW6	A0A2G2ZB97	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.556
LSM1	T459_01880	A0A1U8ECW6	A0A1U8FAD0	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	mRNA-decapping enzyme-like protein.	0.709
LSM1	T459_06120	A0A1U8ECW6	A0A2G3A9V2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	DUF295 domain-containing protein.	0.791
LSM1	T459_15612	A0A1U8ECW6	A0A1U8GRY6	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	mRNA-decapping enzyme subunit 2.	0.926
LSM1	T459_18051	A0A1U8ECW6	A0A1U8H3K6	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	mRNA-decapping enzyme-like protein.	0.709
LSM1	T459_21774	A0A1U8ECW6	A0A2G2YXL1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	DEAD-box ATP-dependent RNA helicase 6; Belongs to the DEAD box helicase family.	0.952
LSM1	T459_25127	A0A1U8ECW6	A0A2G2YJV9	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	DEAD-box ATP-dependent RNA helicase 6; Belongs to the DEAD box helicase family.	0.952
LSM1	T459_29881	A0A1U8ECW6	A0A1U8FWH8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.	0.722
LSM1-2	LSM1	A0A1U8FUD8	A0A1U8ECW6	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.901
LSM1-2	LSM1-3	A0A1U8FUD8	A0A2G2ZB97	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.549
LSM1-2	T459_01880	A0A1U8FUD8	A0A1U8FAD0	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	mRNA-decapping enzyme-like protein.	0.709
LSM1-2	T459_06120	A0A1U8FUD8	A0A2G3A9V2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	DUF295 domain-containing protein.	0.791
LSM1-2	T459_15612	A0A1U8FUD8	A0A1U8GRY6	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	mRNA-decapping enzyme subunit 2.	0.926
LSM1-2	T459_18051	A0A1U8FUD8	A0A1U8H3K6	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	mRNA-decapping enzyme-like protein.	0.709
LSM1-2	T459_21774	A0A1U8FUD8	A0A2G2YXL1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	DEAD-box ATP-dependent RNA helicase 6; Belongs to the DEAD box helicase family.	0.952
LSM1-2	T459_25127	A0A1U8FUD8	A0A2G2YJV9	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	DEAD-box ATP-dependent RNA helicase 6; Belongs to the DEAD box helicase family.	0.952
LSM1-2	T459_29881	A0A1U8FUD8	A0A1U8FWH8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.	0.722
LSM1-3	LSM1	A0A2G2ZB97	A0A1U8ECW6	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.556
LSM1-3	LSM1-2	A0A2G2ZB97	A0A1U8FUD8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.549