(11 nodes) Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, and PWI domain superfamily network (Capsicum annuum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T459_32467	Smg4_UPF3 domain-containing protein. (485 aa)
	T459_31774	Uncharacterized protein. (1527 aa)
	T459_29733	Uncharacterized protein. (155 aa)
	T459_28475	Regulator of nonsense transcripts UPF2. (1202 aa)
	T459_23274	PWI domain-containing protein. (818 aa)
	T459_18109	Uncharacterized protein. (1232 aa)
	T459_18108	Uncharacterized protein. (112 aa)
	T459_11898	Uncharacterized protein. (140 aa)
	T459_08921	Uncharacterized protein. (142 aa)
	T459_07176	Uncharacterized protein. (422 aa)
	T459_04040	Regulator of nonsense transcripts 1-like protein. (1162 aa)

Your Current Organism:

Capsicum annuum

NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T459_04040	T459_07176	A0A2G3APK0	A0A2G3AD04	Regulator of nonsense transcripts 1-like protein.	Uncharacterized protein.	0.556
T459_04040	T459_08921	A0A2G3APK0	A0A2G2ZXX4	Regulator of nonsense transcripts 1-like protein.	Uncharacterized protein.	0.784
T459_04040	T459_11898	A0A2G3APK0	A0A2G2ZND6	Regulator of nonsense transcripts 1-like protein.	Uncharacterized protein.	0.784
T459_04040	T459_18108	A0A2G3APK0	A0A2G2ZDI1	Regulator of nonsense transcripts 1-like protein.	Uncharacterized protein.	0.450
T459_04040	T459_18109	A0A2G3APK0	A0A2G2ZDG3	Regulator of nonsense transcripts 1-like protein.	Uncharacterized protein.	0.450
T459_04040	T459_23274	A0A2G3APK0	A0A2G2YRX2	Regulator of nonsense transcripts 1-like protein.	PWI domain-containing protein.	0.780
T459_04040	T459_28475	A0A2G3APK0	A0A2G2YGV5	Regulator of nonsense transcripts 1-like protein.	Regulator of nonsense transcripts UPF2.	0.983
T459_04040	T459_29733	A0A2G3APK0	A0A2G2Y6F7	Regulator of nonsense transcripts 1-like protein.	Uncharacterized protein.	0.479
T459_04040	T459_31774	A0A2G3APK0	A0A2G2Y3S9	Regulator of nonsense transcripts 1-like protein.	Uncharacterized protein.	0.479
T459_04040	T459_32467	A0A2G3APK0	A0A1U8E5A0	Regulator of nonsense transcripts 1-like protein.	Smg4_UPF3 domain-containing protein.	0.980
T459_07176	T459_04040	A0A2G3AD04	A0A2G3APK0	Uncharacterized protein.	Regulator of nonsense transcripts 1-like protein.	0.556
T459_07176	T459_08921	A0A2G3AD04	A0A2G2ZXX4	Uncharacterized protein.	Uncharacterized protein.	0.651
T459_07176	T459_11898	A0A2G3AD04	A0A2G2ZND6	Uncharacterized protein.	Uncharacterized protein.	0.577
T459_07176	T459_18108	A0A2G3AD04	A0A2G2ZDI1	Uncharacterized protein.	Uncharacterized protein.	0.987
T459_07176	T459_18109	A0A2G3AD04	A0A2G2ZDG3	Uncharacterized protein.	Uncharacterized protein.	0.987
T459_07176	T459_28475	A0A2G3AD04	A0A2G2YGV5	Uncharacterized protein.	Regulator of nonsense transcripts UPF2.	0.570
T459_07176	T459_29733	A0A2G3AD04	A0A2G2Y6F7	Uncharacterized protein.	Uncharacterized protein.	0.705
T459_07176	T459_31774	A0A2G3AD04	A0A2G2Y3S9	Uncharacterized protein.	Uncharacterized protein.	0.705
T459_07176	T459_32467	A0A2G3AD04	A0A1U8E5A0	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.562
T459_08921	T459_04040	A0A2G2ZXX4	A0A2G3APK0	Uncharacterized protein.	Regulator of nonsense transcripts 1-like protein.	0.784