50 items (Capsicum annuum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T459_01089	30S ribosomal protein S18, chloroplastic; Belongs to the bacterial ribosomal protein bS18 family. (101 aa)
	T459_01066	60S ribosomal protein L2, mitochondrial. (165 aa)
	T459_05958	50S ribosomal protein L15. (476 aa)
	T459_10767	MRP-S28 domain-containing protein. (435 aa)
	T459_10766	Uncharacterized protein. (110 aa)
	T459_08669	Uncharacterized protein. (106 aa)
	T459_08241	Uncharacterized protein. (172 aa)
	T459_07376	50S ribosomal protein L13. (195 aa)
	T459_13354	Uncharacterized protein. (128 aa)
	T459_12744	Uncharacterized protein. (90 aa)
	T459_12722	Uncharacterized protein. (75 aa)
	T459_11767	30S ribosomal protein S11, chloroplastic. (110 aa)
	T459_13676	Uncharacterized protein. (133 aa)
	T459_13587	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (266 aa)
	T459_17986	Uncharacterized protein. (339 aa)
	T459_19727	30S ribosomal protein S11, chloroplastic. (196 aa)
	T459_19138	Uncharacterized protein. (96 aa)
	T459_19017	Prolamin_like domain-containing protein. (263 aa)
	T459_22103	60S ribosomal protein L2, mitochondrial. (303 aa)
	T459_21880	Uncharacterized protein. (240 aa)
	T459_21669	Uncharacterized protein. (147 aa)
	T459_22556	Putative ribosomal protein S11, mitochondrial. (298 aa)
	T459_22590	Uncharacterized protein. (158 aa)
	T459_22557	Uncharacterized protein. (114 aa)
	T459_25921	60S ribosomal protein L2, mitochondrial. (388 aa)
	T459_25451	60S ribosomal protein L2, mitochondrial. (155 aa)
	T459_24999	RNA_pol_A_bac domain-containing protein. (182 aa)
	T459_28196	30S ribosomal protein S11, chloroplastic; Belongs to the universal ribosomal protein uS11 family. (138 aa)
	T459_28130	Uncharacterized protein. (188 aa)
	T459_27571	30S ribosomal protein S11, chloroplastic. (101 aa)
	T459_30096	Ribosomal_L2 domain-containing protein. (316 aa)
	T459_29735	Uncharacterized protein. (130 aa)
	T459_29565	30S ribosomal protein S11, chloroplastic; Belongs to the universal ribosomal protein uS11 family. (142 aa)
	T459_29414	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (512 aa)
	T459_29368	Uncharacterized protein. (277 aa)
	T459_33229	Rho GTPase-activating protein 2. (386 aa)
	T459_34084	Uncharacterized protein. (67 aa)
	T459_07692	50S ribosomal protein L28. (142 aa)
	T459_02856	50S ribosomal protein L34. (157 aa)
	T459_05559	30S ribosomal protein S5, chloroplastic; Belongs to the universal ribosomal protein uS5 family. (306 aa)
	T459_13767	L51_S25_CI-B8 domain-containing protein. (119 aa)
	T459_25964	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family. (274 aa)
	T459_21746	50S ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family. (167 aa)
	orf293a	Ribosomal_L2 domain-containing protein. (293 aa)
	orf279	Uncharacterized protein. (279 aa)
	orf190	Uncharacterized protein. (190 aa)
	rps18	30S ribosomal protein S18, chloroplastic; Belongs to the bacterial ribosomal protein bS18 family. (101 aa)
	rps11	30S ribosomal protein S11, chloroplastic; Belongs to the universal ribosomal protein uS11 family. (138 aa)
	T459_03820	30S ribosomal protein S18, chloroplastic; Belongs to the bacterial ribosomal protein bS18 family. (101 aa)
	T459_02539	30S ribosomal protein S11, chloroplastic. (135 aa)

Your Current Organism:

Capsicum annuum

NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T459_01066	T459_01089	A0A2G3AG27	A0A2G3AG52	60S ribosomal protein L2, mitochondrial.	30S ribosomal protein S18, chloroplastic; Belongs to the bacterial ribosomal protein bS18 family.	0.527
T459_01066	T459_02539	A0A2G3AG27	A0A2G3AK91	60S ribosomal protein L2, mitochondrial.	30S ribosomal protein S11, chloroplastic.	0.533
T459_01066	T459_03820	A0A2G3AG27	A0A2G3ANZ0	60S ribosomal protein L2, mitochondrial.	30S ribosomal protein S18, chloroplastic; Belongs to the bacterial ribosomal protein bS18 family.	0.527
T459_01066	T459_05559	A0A2G3AG27	A0A1U8FKT3	60S ribosomal protein L2, mitochondrial.	30S ribosomal protein S5, chloroplastic; Belongs to the universal ribosomal protein uS5 family.	0.697
T459_01066	T459_05958	A0A2G3AG27	A0A2G3A9B7	60S ribosomal protein L2, mitochondrial.	50S ribosomal protein L15.	0.875
T459_01066	T459_07376	A0A2G3AG27	A0A2G2ZTF7	60S ribosomal protein L2, mitochondrial.	50S ribosomal protein L13.	0.882
T459_01066	T459_07692	A0A2G3AG27	A0A1U8GBC9	60S ribosomal protein L2, mitochondrial.	50S ribosomal protein L28.	0.786
T459_01066	T459_08241	A0A2G3AG27	A0A2G2ZVY9	60S ribosomal protein L2, mitochondrial.	Uncharacterized protein.	0.714
T459_01066	T459_08669	A0A2G3AG27	A0A2G2ZX47	60S ribosomal protein L2, mitochondrial.	Uncharacterized protein.	0.488
T459_01066	T459_10766	A0A2G3AG27	A0A2G3A380	60S ribosomal protein L2, mitochondrial.	Uncharacterized protein.	0.675
T459_01066	T459_10767	A0A2G3AG27	A0A2G3A392	60S ribosomal protein L2, mitochondrial.	MRP-S28 domain-containing protein.	0.691
T459_01066	T459_11767	A0A2G3AG27	A0A2G2ZN35	60S ribosomal protein L2, mitochondrial.	30S ribosomal protein S11, chloroplastic.	0.533
T459_01066	T459_12722	A0A2G3AG27	A0A2G2ZQL6	60S ribosomal protein L2, mitochondrial.	Uncharacterized protein.	0.629
T459_01066	T459_12744	A0A2G3AG27	A0A2G2ZQR4	60S ribosomal protein L2, mitochondrial.	Uncharacterized protein.	0.665
T459_01066	T459_13354	A0A2G3AG27	A0A2G2ZSI1	60S ribosomal protein L2, mitochondrial.	Uncharacterized protein.	0.722
T459_01066	T459_13587	A0A2G3AG27	A0A2G2ZF06	60S ribosomal protein L2, mitochondrial.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.892
T459_01066	T459_13676	A0A2G3AG27	A0A2G2ZFG5	60S ribosomal protein L2, mitochondrial.	Uncharacterized protein.	0.452
T459_01066	T459_13767	A0A2G3AG27	A0A1U8F553	60S ribosomal protein L2, mitochondrial.	L51_S25_CI-B8 domain-containing protein.	0.733
T459_01066	T459_17986	A0A2G3AG27	A0A2G2ZDB2	60S ribosomal protein L2, mitochondrial.	Uncharacterized protein.	0.887
T459_01066	T459_19017	A0A2G3AG27	A0A2G2Z0U8	60S ribosomal protein L2, mitochondrial.	Prolamin_like domain-containing protein.	0.714