37 items (Capsicum annuum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T459_32515	Uncharacterized protein. (282 aa)
	T459_32353	Uncharacterized protein. (108 aa)
	T459_31661	UvrD-like helicase ATP-binding domain-containing protein. (1887 aa)
	T459_31663	Uncharacterized protein. (1197 aa)
	T459_30029	AAA_12 domain-containing protein. (459 aa)
	T459_30590	Uncharacterized protein. (196 aa)
	T459_31114	CID domain-containing protein. (930 aa)
	T459_26903	Uncharacterized protein. (378 aa)
	T459_28292	Uncharacterized protein. (566 aa)
	T459_25406	Uncharacterized protein. (352 aa)
	T459_26162	Uncharacterized protein. (986 aa)
	T459_23788	UvrD-like helicase ATP-binding domain-containing protein. (1768 aa)
	T459_24034	Uncharacterized protein. (299 aa)
	T459_21383	Uncharacterized protein. (148 aa)
	T459_21884	Uncharacterized protein. (303 aa)
	T459_20099	FBD domain-containing protein. (392 aa)
	T459_16307	Uncharacterized protein. (385 aa)
	T459_15426	NB-ARC domain-containing protein. (559 aa)
	T459_11391	Uncharacterized protein. (1107 aa)
	T459_11390	Uncharacterized protein. (431 aa)
	T459_11392	Uncharacterized protein. (1167 aa)
	T459_13006	AAA_12 domain-containing protein. (165 aa)
	T459_10950	Reverse transcriptase domain-containing protein. (688 aa)
	T459_10949	Uncharacterized protein. (1491 aa)
	T459_00934	NB-ARC domain-containing protein. (419 aa)
	T459_01643	Uncharacterized protein. (292 aa)
	T459_04024	AAA_11 domain-containing protein. (274 aa)
	T459_31664	UvrD-like helicase ATP-binding domain-containing protein. (1541 aa)
	T459_22472	Uncharacterized protein. (1013 aa)
	T459_03482	Mediator of RNA polymerase II transcription subunit 18. (190 aa)
	T459_06059	Uncharacterized protein. (1074 aa)
	T459_09912	RNA polymerase II subunit A C-terminal domain phosphatase SSU72. (193 aa)
	T459_12625	Uncharacterized protein. (1380 aa)
	T459_20690	Mediator of RNA polymerase II transcription subunit 18. (216 aa)
	T459_35031	AAA_11 domain-containing protein. (87 aa)
	T459_33928	TIR domain-containing protein. (1250 aa)
	T459_33885	NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family. (1164 aa)

Your Current Organism:

Capsicum annuum

NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T459_03482	T459_20690	A0A1U8F1S9	A0A1U8HCY6	Mediator of RNA polymerase II transcription subunit 18.	Mediator of RNA polymerase II transcription subunit 18.	0.543
T459_09912	T459_22472	A0A1U8G7N7	A0A1U8EG99	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	Uncharacterized protein.	0.964
T459_09912	T459_26162	A0A1U8G7N7	A0A2G2YMT6	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	Uncharacterized protein.	0.964
T459_09912	T459_31114	A0A1U8G7N7	A0A2G2YAH3	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	CID domain-containing protein.	0.964
T459_10949	T459_10950	A0A2G3A3R2	A0A2G3A3N7	Uncharacterized protein.	Reverse transcriptase domain-containing protein.	0.636
T459_10950	T459_10949	A0A2G3A3N7	A0A2G3A3R2	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.636
T459_20690	T459_03482	A0A1U8HCY6	A0A1U8F1S9	Mediator of RNA polymerase II transcription subunit 18.	Mediator of RNA polymerase II transcription subunit 18.	0.543
T459_22472	T459_09912	A0A1U8EG99	A0A1U8G7N7	Uncharacterized protein.	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	0.964
T459_22472	T459_26162	A0A1U8EG99	A0A2G2YMT6	Uncharacterized protein.	Uncharacterized protein.	0.902
T459_22472	T459_31114	A0A1U8EG99	A0A2G2YAH3	Uncharacterized protein.	CID domain-containing protein.	0.975
T459_26162	T459_09912	A0A2G2YMT6	A0A1U8G7N7	Uncharacterized protein.	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	0.964
T459_26162	T459_22472	A0A2G2YMT6	A0A1U8EG99	Uncharacterized protein.	Uncharacterized protein.	0.902
T459_26162	T459_31114	A0A2G2YMT6	A0A2G2YAH3	Uncharacterized protein.	CID domain-containing protein.	0.975
T459_31114	T459_09912	A0A2G2YAH3	A0A1U8G7N7	CID domain-containing protein.	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	0.964
T459_31114	T459_22472	A0A2G2YAH3	A0A1U8EG99	CID domain-containing protein.	Uncharacterized protein.	0.975
T459_31114	T459_26162	A0A2G2YAH3	A0A2G2YMT6	CID domain-containing protein.	Uncharacterized protein.	0.975
T459_31663	T459_31664	A0A2G2Y487	A0A2G2Y466	Uncharacterized protein.	UvrD-like helicase ATP-binding domain-containing protein.	0.456
T459_31664	T459_31663	A0A2G2Y466	A0A2G2Y487	UvrD-like helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.456