51 items (Capsicum annuum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T459_05932	Uncharacterized protein. (216 aa)
	T459_05791	Uncharacterized protein. (947 aa)
	T459_05621	Uncharacterized protein. (320 aa)
	T459_05620	Mediator of RNA polymerase II transcription subunit 16. (899 aa)
	T459_05447	Protein MRG1. (258 aa)
	T459_05092	Uncharacterized protein. (80 aa)
	T459_08686	Uncharacterized protein. (327 aa)
	T459_07794	Cryptochrome-1. (642 aa)
	T459_12479	Protein GIGANTEA. (1161 aa)
	T459_12265	Uncharacterized protein. (605 aa)
	T459_14826	Uncharacterized protein. (146 aa)
	T459_14753	Uncharacterized protein. (236 aa)
	T459_14455	Putative lysine-specific demethylase ELF6. (1413 aa)
	T459_13562	Uncharacterized protein. (115 aa)
	T459_20776	Uncharacterized protein. (388 aa)
	T459_20822	Bromo domain-containing protein. (933 aa)
	T459_21421	Uncharacterized protein. (318 aa)
	T459_23888	Uncharacterized protein. (156 aa)
	T459_34215	Uncharacterized protein. (216 aa)
	T459_01443	Transcription factor bHLH81. (394 aa)
	T459_26614	Transcription factor bHLH80. (378 aa)
	T459_25526	UPF0235 protein. (392 aa)
	T459_25292	Uncharacterized protein. (91 aa)
	T459_24959	Transcription factor VOZ1. (483 aa)
	T459_28894	Uncharacterized protein. (546 aa)
	T459_27866	Transcription factor bHLH80. (199 aa)
	T459_27867	Uncharacterized protein. (374 aa)
	T459_31513	Transcription factor bHLH80. (449 aa)
	T459_30596	Protein GIGANTEA. (1148 aa)
	T459_30145	Nuclear transcription factor Y subunit B-3. (202 aa)
	T459_35207	Uncharacterized protein. (121 aa)
	T459_20690	Mediator of RNA polymerase II transcription subunit 18. (216 aa)
	T459_19246	RNA-binding KH domain-containing protein PEPPER. (477 aa)
	T459_16900	Uncharacterized protein. (383 aa)
	T459_17742	Uncharacterized protein. (530 aa)
	T459_28712	Zinc finger protein 7. (208 aa)
	T459_31047	Uncharacterized protein. (718 aa)
	T459_03482	Mediator of RNA polymerase II transcription subunit 18. (190 aa)
	T459_17398	Uncharacterized protein. (767 aa)
	T459_17230	Transcription factor bHLH80. (257 aa)
	T459_13493	Bromo domain-containing protein. (713 aa)
	T459_12908	Transcription initiation factor TFIID subunit 14. (242 aa)
	T459_01038	JmjC domain-containing protein. (381 aa)
	T459_11780	Uncharacterized protein. (424 aa)
	T459_14553	Uncharacterized protein. (212 aa)
	T459_02611	K-box domain-containing protein. (233 aa)
	T459_01503	Putative lysine-specific demethylase JMJD5. (461 aa)
	UPA21	RNA-binding KH domain-containing protein PEPPER. (355 aa)
	T459_06256	Transcription initiation factor TFIID subunit 14b. (284 aa)
	T459_17416	Uncharacterized protein. (181 aa)
	T459_26504	Uncharacterized protein. (216 aa)

Your Current Organism:

Capsicum annuum

NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T459_01038	T459_14455	A0A1U8GLE9	A0A2G2ZHH0	JmjC domain-containing protein.	Putative lysine-specific demethylase ELF6.	0.531
T459_01443	T459_17398	A0A1U8E2X9	A0A1U8F6A0	Transcription factor bHLH81.	Uncharacterized protein.	0.436
T459_01503	T459_14455	A0A2G3AHA4	A0A2G2ZHH0	Putative lysine-specific demethylase JMJD5.	Putative lysine-specific demethylase ELF6.	0.435
T459_02611	T459_20776	A0A2G3AKH2	A0A2G2Z5L9	K-box domain-containing protein.	Uncharacterized protein.	0.407
T459_03482	T459_05620	A0A1U8F1S9	A0A2G3A8F3	Mediator of RNA polymerase II transcription subunit 18.	Mediator of RNA polymerase II transcription subunit 16.	0.624
T459_03482	T459_05621	A0A1U8F1S9	A0A2G3A8I2	Mediator of RNA polymerase II transcription subunit 18.	Uncharacterized protein.	0.624
T459_03482	T459_20690	A0A1U8F1S9	A0A1U8HCY6	Mediator of RNA polymerase II transcription subunit 18.	Mediator of RNA polymerase II transcription subunit 18.	0.543
T459_05447	T459_06256	A0A2G3A7Y0	A0A2G3AAD6	Protein MRG1.	Transcription initiation factor TFIID subunit 14b.	0.732
T459_05447	T459_12908	A0A2G3A7Y0	A0A1U8GCZ1	Protein MRG1.	Transcription initiation factor TFIID subunit 14.	0.732
T459_05447	T459_14455	A0A2G3A7Y0	A0A2G2ZHH0	Protein MRG1.	Putative lysine-specific demethylase ELF6.	0.578
T459_05620	T459_03482	A0A2G3A8F3	A0A1U8F1S9	Mediator of RNA polymerase II transcription subunit 16.	Mediator of RNA polymerase II transcription subunit 18.	0.624
T459_05620	T459_05621	A0A2G3A8F3	A0A2G3A8I2	Mediator of RNA polymerase II transcription subunit 16.	Uncharacterized protein.	0.960
T459_05620	T459_20690	A0A2G3A8F3	A0A1U8HCY6	Mediator of RNA polymerase II transcription subunit 16.	Mediator of RNA polymerase II transcription subunit 18.	0.624
T459_05621	T459_03482	A0A2G3A8I2	A0A1U8F1S9	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 18.	0.624
T459_05621	T459_05620	A0A2G3A8I2	A0A2G3A8F3	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 16.	0.960
T459_05621	T459_20690	A0A2G3A8I2	A0A1U8HCY6	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 18.	0.624
T459_05621	T459_24959	A0A2G3A8I2	A0A2G2YJH1	Uncharacterized protein.	Transcription factor VOZ1.	0.416
T459_06256	T459_05447	A0A2G3AAD6	A0A2G3A7Y0	Transcription initiation factor TFIID subunit 14b.	Protein MRG1.	0.732
T459_06256	T459_12908	A0A2G3AAD6	A0A1U8GCZ1	Transcription initiation factor TFIID subunit 14b.	Transcription initiation factor TFIID subunit 14.	0.548
T459_07794	T459_12479	A0A2G2ZUP1	A0A2G2ZPW3	Cryptochrome-1.	Protein GIGANTEA.	0.476