22 items (Capsicum annuum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T459_02577	RNA polymerase sigma factor sigD, chloroplastic. (420 aa)
	T459_03524	ATPase_AAA_core domain-containing protein. (67 aa)
	T459_23646	ATPase_AAA_core domain-containing protein. (85 aa)
	T459_17928	RNA polymerase sigma factor sigA. (506 aa)
	T459_11652	26S protease regulatory subunit 10B. (215 aa)
	T459_10040	Uncharacterized protein. (318 aa)
	T459_10048	Uncharacterized protein. (315 aa)
	T459_22582	BTP domain-containing protein. (374 aa)
	T459_09552	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial. (516 aa)
	T459_09842	RNA polymerase sigma factor sigA. (508 aa)
	T459_04448	Activated RNA polymerase II transcriptional coactivator p15. (104 aa)
	T459_04453	AAA domain-containing protein; Belongs to the AAA ATPase family. (586 aa)
	T459_34729	BTP domain-containing protein. (278 aa)
	T459_03482	Mediator of RNA polymerase II transcription subunit 18. (190 aa)
	T459_03080	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released. (616 aa)
	T459_20690	Mediator of RNA polymerase II transcription subunit 18. (216 aa)
	T459_21384	RNA_pol_sigma70 domain-containing protein. (549 aa)
	T459_34208	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family. (398 aa)
	T459_22593	RNA polymerase sigma factor sigF, chloroplastic. (568 aa)
	T459_00108	RNA polymerase II transcriptional coactivator KELP. (192 aa)
	T459_25202	ATPase_AAA_core domain-containing protein. (538 aa)
	T459_00107	DEK_C domain-containing protein. (114 aa)

Your Current Organism:

Capsicum annuum

NCBI taxonomy Id: 4072
Other names: C. annuum, Capsicum annuum L., Capsicum sp. HD-HW, Capsicum sp. JYM-2013

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T459_00107	T459_04448	A0A2G3ADB2	A0A1U8FIP4	DEK_C domain-containing protein.	Activated RNA polymerase II transcriptional coactivator p15.	0.595
T459_00108	T459_04448	A0A2G3ADA8	A0A1U8FIP4	RNA polymerase II transcriptional coactivator KELP.	Activated RNA polymerase II transcriptional coactivator p15.	0.595
T459_02577	T459_03080	A0A2G3AKD1	A0A1U8EM77	RNA polymerase sigma factor sigD, chloroplastic.	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	0.530
T459_02577	T459_09552	A0A2G3AKD1	A0A1U8G8V2	RNA polymerase sigma factor sigD, chloroplastic.	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial.	0.540
T459_02577	T459_22593	A0A2G3AKD1	A0A2G2YPZ1	RNA polymerase sigma factor sigD, chloroplastic.	RNA polymerase sigma factor sigF, chloroplastic.	0.534
T459_03080	T459_02577	A0A1U8EM77	A0A2G3AKD1	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	RNA polymerase sigma factor sigD, chloroplastic.	0.530
T459_03080	T459_09842	A0A1U8EM77	A0A1U8G7V4	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	RNA polymerase sigma factor sigA.	0.554
T459_03080	T459_17928	A0A1U8EM77	A0A2G2ZD00	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	RNA polymerase sigma factor sigA.	0.555
T459_03482	T459_20690	A0A1U8F1S9	A0A1U8HCY6	Mediator of RNA polymerase II transcription subunit 18.	Mediator of RNA polymerase II transcription subunit 18.	0.543
T459_03482	T459_22582	A0A1U8F1S9	A0A2G2YPW6	Mediator of RNA polymerase II transcription subunit 18.	BTP domain-containing protein.	0.586
T459_03482	T459_34729	A0A1U8F1S9	A0A2G2XV70	Mediator of RNA polymerase II transcription subunit 18.	BTP domain-containing protein.	0.586
T459_04448	T459_00107	A0A1U8FIP4	A0A2G3ADB2	Activated RNA polymerase II transcriptional coactivator p15.	DEK_C domain-containing protein.	0.595
T459_04448	T459_00108	A0A1U8FIP4	A0A2G3ADA8	Activated RNA polymerase II transcriptional coactivator p15.	RNA polymerase II transcriptional coactivator KELP.	0.595
T459_04453	T459_11652	A0A1U8FBY6	A0A2G2ZMJ6	AAA domain-containing protein; Belongs to the AAA ATPase family.	26S protease regulatory subunit 10B.	0.697
T459_04453	T459_23646	A0A1U8FBY6	A0A2G2YTA0	AAA domain-containing protein; Belongs to the AAA ATPase family.	ATPase_AAA_core domain-containing protein.	0.661
T459_04453	T459_25202	A0A1U8FBY6	A0A2G2YK35	AAA domain-containing protein; Belongs to the AAA ATPase family.	ATPase_AAA_core domain-containing protein.	0.661
T459_04453	T459_34208	A0A1U8FBY6	A0A1U8E037	AAA domain-containing protein; Belongs to the AAA ATPase family.	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	0.687
T459_09552	T459_02577	A0A1U8G8V2	A0A2G3AKD1	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial.	RNA polymerase sigma factor sigD, chloroplastic.	0.540
T459_09552	T459_09842	A0A1U8G8V2	A0A1U8G7V4	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial.	RNA polymerase sigma factor sigA.	0.537
T459_09552	T459_17928	A0A1U8G8V2	A0A2G2ZD00	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial.	RNA polymerase sigma factor sigA.	0.536