(5 nodes) Translation protein SH3-like domain superfamily, and Ribosome network (Thioploca ingrica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rplQ	50S ribosomal protein L17. (129 aa)
	rplU	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (109 aa)
	rpmA	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (99 aa)
	rpsP	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (118 aa)
	rplS	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (125 aa)

Your Current Organism:

Thioploca ingrica

NCBI taxonomy Id: 40754
Other names: T. ingrica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplQ	rplS	THII_0287	THII_3882	50S ribosomal protein L17.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.998
rplQ	rplU	THII_0287	THII_2916	50S ribosomal protein L17.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.996
rplQ	rpmA	THII_0287	THII_2917	50S ribosomal protein L17.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rplQ	rpsP	THII_0287	THII_3879	50S ribosomal protein L17.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.998
rplS	rplQ	THII_3882	THII_0287	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	50S ribosomal protein L17.	0.998
rplS	rplU	THII_3882	THII_2916	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
rplS	rpmA	THII_3882	THII_2917	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rplS	rpsP	THII_3882	THII_3879	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rplU	rplQ	THII_2916	THII_0287	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	50S ribosomal protein L17.	0.996
rplU	rplS	THII_2916	THII_3882	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.998
rplU	rpmA	THII_2916	THII_2917	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.999
rplU	rpsP	THII_2916	THII_3879	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.997
rpmA	rplQ	THII_2917	THII_0287	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	50S ribosomal protein L17.	0.998
rpmA	rplS	THII_2917	THII_3882	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.998
rpmA	rplU	THII_2917	THII_2916	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
rpmA	rpsP	THII_2917	THII_3879	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.998
rpsP	rplQ	THII_3879	THII_0287	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	50S ribosomal protein L17.	0.998
rpsP	rplS	THII_3879	THII_3882	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.999
rpsP	rplU	THII_3879	THII_2916	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.997
rpsP	rpmA	THII_3879	THII_2917	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.998