(41 nodes) Respirasome network (Thioploca ingrica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	THII_3812	Cytochrome c. (145 aa)
	THII_1563	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase. (165 aa)
	THII_1615	Cytochrome c oxidase cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family. (482 aa)
	THII_1616	Cytochrome c oxidase cbb3-type, subunit II. (205 aa)
	THII_1618	Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (308 aa)
	THII_1675	Putative nitrate reductase subunit. (290 aa)
	THII_1767	Hypothetical protein. (447 aa)
	THII_1818	Ferredoxin. (96 aa)
	THII_2319	Hypothetical protein. (293 aa)
	THII_2676	Collagenase-like protease. (299 aa)
	THII_2946	NADH-quinone oxidoreductase subunit M. (507 aa)
	THII_2947	NADH-quinone oxidoreductase subunit L. (648 aa)
	THII_2949	NADH-quinone oxidoreductase subunit J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (195 aa)
	nuoI	NADH-quinone oxidoreductase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (151 aa)
	THII_2954	NADH-quinone oxidoreductase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (792 aa)
	THII_3106	Dissimilatory adenylylsulfate reductase alpha subunit precursor. (638 aa)
	THII_3111	Cytochrome c. (242 aa)
	THII_3129	Hypothetical protein. (82 aa)
	THII_3174	Hypothetical protein. (423 aa)
	THII_3657	Hypothetical protein. (130 aa)
	THII_3858	Succinate dehydrogenase. (275 aa)
	THII_3859	Succinate dehydrogenase flavoprotein subunit. (59 aa)
	THII_3860	Succinate dehydrogenase iron-sulfur subunit. (249 aa)
	THII_1524	NADP oxidoreductase. (597 aa)
	THII_1523	Hydrogen dehydrogenase. (247 aa)
	THII_1247	Cytochrome c, class I. (337 aa)
	THII_1149	Hypothetical protein. (137 aa)
	THII_1104	Cytochrome P460. (172 aa)
	THII_0852	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (410 aa)
	THII_0851	Cytochrome c. (252 aa)
	THII_0527	NADH-quinone oxidoreductase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (423 aa)
	THII_0523	NADH-quinone oxidoreductase subunit E. (169 aa)
	nuoA	NADH-quinone oxidoreductase subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. (120 aa)
	THII_0433	Succinate dehydrogenase cytochrome b subunit. (129 aa)
	THII_0431	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (596 aa)
	THII_0430	Succinate dehydrogenase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (259 aa)
	THII_0393	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase. (157 aa)
	THII_0341	Cytochrome c5. (114 aa)
	THII_0335	Nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family. (466 aa)
	THII_0323	Cytochrome c, class I. (290 aa)
	THII_0150	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein. (87 aa)

Your Current Organism:

Thioploca ingrica

NCBI taxonomy Id: 40754
Other names: T. ingrica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
THII_0150	THII_0323	THII_0150	THII_0323	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Cytochrome c, class I.	0.654
THII_0150	THII_0430	THII_0150	THII_0430	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Succinate dehydrogenase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.	0.539
THII_0150	THII_0431	THII_0150	THII_0431	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.	0.443
THII_0150	THII_0433	THII_0150	THII_0433	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Succinate dehydrogenase cytochrome b subunit.	0.605
THII_0150	THII_0523	THII_0150	THII_0523	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	NADH-quinone oxidoreductase subunit E.	0.692
THII_0150	THII_0527	THII_0150	THII_0527	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	NADH-quinone oxidoreductase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	0.692
THII_0150	THII_0851	THII_0150	THII_0851	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Cytochrome c.	0.661
THII_0150	THII_0852	THII_0150	THII_0852	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.723
THII_0150	THII_1523	THII_0150	THII_1523	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Hydrogen dehydrogenase.	0.730
THII_0150	THII_1524	THII_0150	THII_1524	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	NADP oxidoreductase.	0.999
THII_0150	THII_2946	THII_0150	THII_2946	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	NADH-quinone oxidoreductase subunit M.	0.878
THII_0150	THII_2947	THII_0150	THII_2947	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	NADH-quinone oxidoreductase subunit L.	0.825
THII_0150	THII_2949	THII_0150	THII_2949	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	NADH-quinone oxidoreductase subunit J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.	0.819
THII_0150	THII_2954	THII_0150	THII_2954	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	NADH-quinone oxidoreductase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.	0.730
THII_0150	THII_3106	THII_0150	THII_3106	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Dissimilatory adenylylsulfate reductase alpha subunit precursor.	0.443
THII_0150	THII_3858	THII_0150	THII_3858	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Succinate dehydrogenase.	0.443
THII_0150	THII_3859	THII_0150	THII_3859	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Succinate dehydrogenase flavoprotein subunit.	0.443
THII_0150	THII_3860	THII_0150	THII_3860	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	Succinate dehydrogenase iron-sulfur subunit.	0.539
THII_0150	nuoA	THII_0150	THII_0517	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	NADH-quinone oxidoreductase subunit A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.	0.868
THII_0323	THII_0150	THII_0323	THII_0150	Cytochrome c, class I.	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.	0.654