(31 nodes) WD40/YVTN repeat-like-containing domain superfamily network (Thioploca ingrica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	THII_3140	WD40 repeat-containing protein. (321 aa)
	THII_3183	Hypothetical protein. (544 aa)
	THII_3255	Two-component system sensor histidine kinase/response regulator. (213 aa)
	THII_3292	Hypothetical protein. (332 aa)
	THII_3270	Type IV pilin biogenesis protein. (1950 aa)
	THII_0212	Serine/threonine protein kinase with WD40 repeats. (340 aa)
	THII_0260	Conserved repeat protein. (2432 aa)
	THII_3735	Glycosyl hydrolase. (475 aa)
	THII_3682	Response regulator receiver domain-containing protein. (1502 aa)
	THII_3523	Hypothetical protein. (535 aa)
	THII_3504	WD40 repeat-containing protein. (1382 aa)
	bamB	Beta-barrel assembly machine subunit BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (381 aa)
	THII_3322	Binding-protein-dependent transporters inner membrane component. (766 aa)
	THII_0274	Two-component system sensor histidine kinase/response regulator. (1183 aa)
	THII_0453	Hypothetical protein. (917 aa)
	THII_0490	Hypothetical protein. (502 aa)
	THII_0872	WD40 repeat-containing protein. (1206 aa)
	THII_0924	Hypothetical protein. (644 aa)
	THII_1058	G-protein beta WD-40 repeat. (482 aa)
	THII_1505	Ig family protein. (524 aa)
	THII_1506	Hypothetical protein. (2074 aa)
	THII_1573	Two-component system sensor histidine kinase/response regulator. (1245 aa)
	THII_1574	TIR domain-containing protein. (2013 aa)
	THII_1777	Signal transduction histidine kinase. (1093 aa)
	THII_2120	WD40 repeat-containing protein. (1295 aa)
	THII_2126	Hypothetical protein. (2845 aa)
	THII_2778	WD40 repeat-containing protein, subgroup. (1082 aa)
	THII_2884	Nitrous oxide reductase. (762 aa)
	THII_2996	WD repeat-containing protein. (1062 aa)
	THII_2897	Hypothetical protein. (371 aa)
	THII_3139	Serine/threonine protein kinase with WD40 repeats. (351 aa)

Your Current Organism:

Thioploca ingrica

NCBI taxonomy Id: 40754
Other names: T. ingrica

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
THII_0453	THII_2996	Hypothetical protein.	WD repeat-containing protein.	0.484
THII_0872	THII_2996	WD40 repeat-containing protein.	WD repeat-containing protein.	0.486
THII_1058	THII_2996	G-protein beta WD-40 repeat.	WD repeat-containing protein.	0.452
THII_1505	THII_1506	Ig family protein.	Hypothetical protein.	0.762
THII_1506	THII_1505	Hypothetical protein.	Ig family protein.	0.762
THII_1573	THII_1574	Two-component system sensor histidine kinase/response regulator.	TIR domain-containing protein.	0.416
THII_1574	THII_1573	TIR domain-containing protein.	Two-component system sensor histidine kinase/response regulator.	0.416
THII_1574	THII_2996	TIR domain-containing protein.	WD repeat-containing protein.	0.485
THII_2120	THII_2996	WD40 repeat-containing protein.	WD repeat-containing protein.	0.484
THII_2778	THII_2996	WD40 repeat-containing protein, subgroup.	WD repeat-containing protein.	0.508
THII_2996	THII_0453	WD repeat-containing protein.	Hypothetical protein.	0.484
THII_2996	THII_0872	WD repeat-containing protein.	WD40 repeat-containing protein.	0.486
THII_2996	THII_1058	WD repeat-containing protein.	G-protein beta WD-40 repeat.	0.452
THII_2996	THII_1574	WD repeat-containing protein.	TIR domain-containing protein.	0.485
THII_2996	THII_2120	WD repeat-containing protein.	WD40 repeat-containing protein.	0.484
THII_2996	THII_2778	WD repeat-containing protein.	WD40 repeat-containing protein, subgroup.	0.508
THII_2996	THII_3139	WD repeat-containing protein.	Serine/threonine protein kinase with WD40 repeats.	0.409
THII_2996	THII_3140	WD repeat-containing protein.	WD40 repeat-containing protein.	0.404
THII_2996	THII_3504	WD repeat-containing protein.	WD40 repeat-containing protein.	0.484
THII_3139	THII_2996	Serine/threonine protein kinase with WD40 repeats.	WD repeat-containing protein.	0.409