STRINGSTRING
A0A3Q7EGR2 A0A3Q7EGR2 A0A3Q7EHK6 A0A3Q7EHK6 A0A3Q7EZ34 A0A3Q7EZ34 A0A3Q7F5B7 A0A3Q7F5B7 A0A3Q7F6K5 A0A3Q7F6K5 A0A3Q7F6Y5 A0A3Q7F6Y5 A0A3Q7F9R0 A0A3Q7F9R0 A0A3Q7FN63 A0A3Q7FN63 A0A3Q7FQH0 A0A3Q7FQH0 A0A3Q7FR37 A0A3Q7FR37 A0A3Q7FTK4 A0A3Q7FTK4 A0A3Q7FX15 A0A3Q7FX15 A0A3Q7GL31 A0A3Q7GL31 A0A3Q7GMS7 A0A3Q7GMS7 A0A3Q7GZB2 A0A3Q7GZB2 A0A3Q7H4R1 A0A3Q7H4R1 A0A3Q7H8E3 A0A3Q7H8E3 A0A3Q7HYL3 A0A3Q7HYL3 A0A3Q7HYY1 A0A3Q7HYY1 A0A3Q7I508 A0A3Q7I508 A0A3Q7I6X8 A0A3Q7I6X8 A0A3Q7I7F7 A0A3Q7I7F7 A0A3Q7IPK6 A0A3Q7IPK6 A0A3Q7J4E0 A0A3Q7J4E0 A0A3Q7JDB5 A0A3Q7JDB5 A0A3Q7JFT1 A0A3Q7JFT1 Q53U41_SOLLC Q53U41_SOLLC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A3Q7EGR2U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (199 aa)
A0A3Q7EHK6Uncharacterized protein. (723 aa)
A0A3Q7EZ34Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
A0A3Q7F5B7Sm domain-containing protein. (166 aa)
A0A3Q7F6K5Uncharacterized protein. (804 aa)
A0A3Q7F6Y5Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
A0A3Q7F9R0RRM domain-containing protein. (478 aa)
A0A3Q7FN63Matrin-type domain-containing protein. (509 aa)
A0A3Q7FQH0Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
A0A3Q7FR37PSP domain-containing protein. (558 aa)
A0A3Q7FTK4Uncharacterized protein. (286 aa)
A0A3Q7FX15Uncharacterized protein. (840 aa)
A0A3Q7GL31Small nuclear ribonucleoprotein G. (80 aa)
A0A3Q7GMS7Small nuclear ribonucleoprotein-associated protein. (281 aa)
A0A3Q7GZB2Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
A0A3Q7H4R1Uncharacterized protein. (233 aa)
A0A3Q7H8E3Uncharacterized protein. (73 aa)
A0A3Q7HYL3Matrin-type domain-containing protein. (345 aa)
A0A3Q7HYY1Sm domain-containing protein. (98 aa)
A0A3Q7I508Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (115 aa)
A0A3Q7I6X8Small nuclear ribonucleoprotein Sm D2. (109 aa)
A0A3Q7I7F7Uncharacterized protein. (364 aa)
A0A3Q7IPK6Small nuclear ribonucleoprotein G. (81 aa)
A0A3Q7J4E0Uncharacterized protein. (95 aa)
A0A3Q7JDB5Uncharacterized protein. (1112 aa)
A0A3Q7JFT1Sm domain-containing protein. (88 aa)
Q53U41_SOLLCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (197 aa)
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato
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