STRINGSTRING
A0A3Q7GZB2 A0A3Q7GZB2 A0A3Q7EGR2 A0A3Q7EGR2 LSM4 LSM4 A0A3Q7EZ34 A0A3Q7EZ34 A0A3Q7F026 A0A3Q7F026 A0A3Q7F6Y5 A0A3Q7F6Y5 A0A3Q7FAS0 A0A3Q7FAS0 A0A3Q7FFU8 A0A3Q7FFU8 A0A3Q7FKZ3 A0A3Q7FKZ3 A0A3Q7FKZ7 A0A3Q7FKZ7 A0A3Q7FLB2 A0A3Q7FLB2 A0A3Q7FQH0 A0A3Q7FQH0 A0A3Q7GF99 A0A3Q7GF99 A0A3Q7GL31 A0A3Q7GL31 A0A3Q7GQY1 A0A3Q7GQY1 A0A3Q7GTF9 A0A3Q7GTF9 A0A3Q7HI28 A0A3Q7HI28 A0A3Q7HUR2 A0A3Q7HUR2 A0A3Q7HYY1 A0A3Q7HYY1 A0A3Q7I1D8 A0A3Q7I1D8 LSM4-2 LSM4-2 A0A3Q7I6X8 A0A3Q7I6X8 A0A3Q7I980 A0A3Q7I980 A0A3Q7IPK6 A0A3Q7IPK6 A0A3Q7JFT1 A0A3Q7JFT1 K4AZH1_SOLLC K4AZH1_SOLLC K4C5Y6_SOLLC K4C5Y6_SOLLC Q53U41_SOLLC Q53U41_SOLLC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A3Q7GZB2Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
A0A3Q7EGR2U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (199 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (148 aa)
A0A3Q7EZ34Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
A0A3Q7F026Coilin_N domain-containing protein. (253 aa)
A0A3Q7F6Y5Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
A0A3Q7FAS0Uncharacterized protein. (394 aa)
A0A3Q7FFU8Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
A0A3Q7FKZ3Uncharacterized protein. (599 aa)
A0A3Q7FKZ7Uncharacterized protein. (230 aa)
A0A3Q7FLB2Uncharacterized protein. (250 aa)
A0A3Q7FQH0Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
A0A3Q7GF99Coilin_N domain-containing protein. (821 aa)
A0A3Q7GL31Small nuclear ribonucleoprotein G. (80 aa)
A0A3Q7GQY1PROCT domain-containing protein. (52 aa)
A0A3Q7GTF9Uncharacterized protein. (55 aa)
A0A3Q7HI28Nop domain-containing protein. (399 aa)
A0A3Q7HUR2Nop domain-containing protein. (483 aa)
A0A3Q7HYY1Sm domain-containing protein. (98 aa)
A0A3Q7I1D8MPN domain-containing protein. (2384 aa)
LSM4-2U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (154 aa)
A0A3Q7I6X8Small nuclear ribonucleoprotein Sm D2. (109 aa)
A0A3Q7I980Uncharacterized protein. (980 aa)
A0A3Q7IPK6Small nuclear ribonucleoprotein G. (81 aa)
A0A3Q7JFT1Sm domain-containing protein. (88 aa)
K4AZH1_SOLLCNop domain-containing protein. (217 aa)
K4C5Y6_SOLLCUncharacterized protein. (176 aa)
Q53U41_SOLLCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (197 aa)
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato
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