(19 nodes) Response to far red light network (Solanum lycopersicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

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Your Input:
	HY5	Transcription factor HY5; Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. (158 aa)
	A0A3Q7JDP2	ANK_REP_REGION domain-containing protein. (126 aa)
	A0A3Q7FG74	Uncharacterized protein. (516 aa)
	A0A3Q7FND8	Uncharacterized protein. (528 aa)
	A0A3Q7GDM9	Uncharacterized protein. (377 aa)
	CRY1a	Uncharacterized protein. (960 aa)
	A0A3Q7H991	SWIM-type domain-containing protein. (849 aa)
	A0A3Q7HH30	ANK_REP_REGION domain-containing protein. (169 aa)
	A0A3Q7HJ14	Amidohydro_3 domain-containing protein. (588 aa)
	A0A3Q7I579	Uncharacterized protein. (373 aa)
	A0A3Q7I610	ABC transporter domain-containing protein. (322 aa)
	A0A3Q7ID06	BHLH domain-containing protein. (391 aa)
	A0A3Q7ILA5	Uncharacterized protein. (155 aa)
	A0A3Q7IN38	Uncharacterized protein. (238 aa)
	A0A3Q7JYR3	Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family. (261 aa)
	A0A494G953	Uncharacterized protein. (202 aa)
	K4BI19_SOLLC	Uncharacterized protein. (458 aa)
	ELIP	Early light inducible protein. (191 aa)
	Cry1b	Cryptochrome 1b. (583 aa)

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A3Q7FG74	A0A3Q7HH30	A0A3Q7FG74	A0A3Q7HH30	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.432
A0A3Q7FG74	A0A3Q7I610	A0A3Q7FG74	A0A3Q7I610	Uncharacterized protein.	ABC transporter domain-containing protein.	0.420
A0A3Q7FG74	A0A3Q7JDP2	A0A3Q7FG74	A0A3Q7JDP2	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.432
A0A3Q7H991	HY5	A0A3Q7H991	Q9SM50	SWIM-type domain-containing protein.	Transcription factor HY5; Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes.	0.682
A0A3Q7HH30	A0A3Q7FG74	A0A3Q7HH30	A0A3Q7FG74	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.432
A0A3Q7I610	A0A3Q7FG74	A0A3Q7I610	A0A3Q7FG74	ABC transporter domain-containing protein.	Uncharacterized protein.	0.420
A0A3Q7JDP2	A0A3Q7FG74	A0A3Q7JDP2	A0A3Q7FG74	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.432
CRY1a	Cry1b	A0A3Q7H047	Q93VS0	Uncharacterized protein.	Cryptochrome 1b.	0.902
CRY1a	HY5	A0A3Q7H047	Q9SM50	Uncharacterized protein.	Transcription factor HY5; Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes.	0.828
Cry1b	CRY1a	Q93VS0	A0A3Q7H047	Cryptochrome 1b.	Uncharacterized protein.	0.902
Cry1b	HY5	Q93VS0	Q9SM50	Cryptochrome 1b.	Transcription factor HY5; Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes.	0.787
ELIP	HY5	Q6QDC5	Q9SM50	Early light inducible protein.	Transcription factor HY5; Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes.	0.475
HY5	A0A3Q7H991	Q9SM50	A0A3Q7H991	Transcription factor HY5; Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes.	SWIM-type domain-containing protein.	0.682
HY5	CRY1a	Q9SM50	A0A3Q7H047	Transcription factor HY5; Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes.	Uncharacterized protein.	0.828
HY5	Cry1b	Q9SM50	Q93VS0	Transcription factor HY5; Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes.	Cryptochrome 1b.	0.787
HY5	ELIP	Q9SM50	Q6QDC5	Transcription factor HY5; Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes.	Early light inducible protein.	0.475

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