(13 nodes) Mitochondrial cytochrome c oxidase assembly network (Solanum lycopersicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3Q7EYW2	COX assembly mitochondrial protein. (197 aa)
	A0A3Q7FU61	Uncharacterized protein. (71 aa)
	A0A3Q7G636	Uncharacterized protein. (268 aa)
	A0A3Q7HXP5	Thioredoxin domain-containing protein. (325 aa)
	A0A3Q7I7Z7	Uncharacterized protein. (81 aa)
	A0A3Q7JKF8	TPR_REGION domain-containing protein. (348 aa)
	A0A3Q7EG24	HIG1 domain-containing protein. (97 aa)
	A0A3Q7EPW8	HIG1 domain-containing protein. (100 aa)
	A0A3Q7ITF9	Uncharacterized protein. (235 aa)
	A0A3Q7ITF5	Uncharacterized protein. (181 aa)
	A0A3Q7ITE5	Uncharacterized protein. (140 aa)
	A0A3Q7ISD8	Uncharacterized protein. (135 aa)
	A0A3Q7IBS7	Uncharacterized protein. (145 aa)

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A3Q7EYW2	A0A3Q7FU61	COX assembly mitochondrial protein.	Uncharacterized protein.	0.712
A0A3Q7EYW2	A0A3Q7IBS7	COX assembly mitochondrial protein.	Uncharacterized protein.	0.586
A0A3Q7FU61	A0A3Q7EYW2	Uncharacterized protein.	COX assembly mitochondrial protein.	0.712
A0A3Q7FU61	A0A3Q7G636	Uncharacterized protein.	Uncharacterized protein.	0.573
A0A3Q7FU61	A0A3Q7HXP5	Uncharacterized protein.	Thioredoxin domain-containing protein.	0.526
A0A3Q7FU61	A0A3Q7IBS7	Uncharacterized protein.	Uncharacterized protein.	0.717
A0A3Q7G636	A0A3Q7FU61	Uncharacterized protein.	Uncharacterized protein.	0.573
A0A3Q7G636	A0A3Q7IBS7	Uncharacterized protein.	Uncharacterized protein.	0.560
A0A3Q7HXP5	A0A3Q7FU61	Thioredoxin domain-containing protein.	Uncharacterized protein.	0.526
A0A3Q7HXP5	A0A3Q7IBS7	Thioredoxin domain-containing protein.	Uncharacterized protein.	0.560
A0A3Q7IBS7	A0A3Q7EYW2	Uncharacterized protein.	COX assembly mitochondrial protein.	0.586
A0A3Q7IBS7	A0A3Q7FU61	Uncharacterized protein.	Uncharacterized protein.	0.717
A0A3Q7IBS7	A0A3Q7G636	Uncharacterized protein.	Uncharacterized protein.	0.560
A0A3Q7IBS7	A0A3Q7HXP5	Uncharacterized protein.	Thioredoxin domain-containing protein.	0.560

Server load: low (12%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Textmining

Neighborhood

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About