STRINGSTRING
K4AZH1_SOLLC K4AZH1_SOLLC Q53U41_SOLLC Q53U41_SOLLC K4CRG8_SOLLC K4CRG8_SOLLC K4CFA6_SOLLC K4CFA6_SOLLC A0A3Q7JM93 A0A3Q7JM93 A0A3Q7JFT1 A0A3Q7JFT1 A0A3Q7J4Y2 A0A3Q7J4Y2 A0A3Q7J4E0 A0A3Q7J4E0 A0A3Q7IZM8 A0A3Q7IZM8 A0A3Q7IYM3 A0A3Q7IYM3 A0A3Q7IRU5 A0A3Q7IRU5 A0A3Q7IQI5 A0A3Q7IQI5 A0A3Q7IQD7 A0A3Q7IQD7 A0A3Q7IPK6 A0A3Q7IPK6 A0A3Q7INH3 A0A3Q7INH3 A0A3Q7IL51 A0A3Q7IL51 A0A3Q7IL47 A0A3Q7IL47 A0A3Q7IKZ5 A0A3Q7IKZ5 A0A3Q7IJG1 A0A3Q7IJG1 A0A3Q7I980 A0A3Q7I980 A0A3Q7I7F7 A0A3Q7I7F7 A0A3Q7I6X8 A0A3Q7I6X8 A0A3Q7I6B1 A0A3Q7I6B1 LSM4-2 LSM4-2 A0A3Q7I437 A0A3Q7I437 A0A3Q7I1D8 A0A3Q7I1D8 A0A3Q7I0H0 A0A3Q7I0H0 A0A3Q7HYY1 A0A3Q7HYY1 A0A3Q7HYL3 A0A3Q7HYL3 A0A3Q7HUR2 A0A3Q7HUR2 A0A3Q7HQA1 A0A3Q7HQA1 A0A3Q7HM61 A0A3Q7HM61 A0A3Q7HI28 A0A3Q7HI28 A0A3Q7HDU4 A0A3Q7HDU4 A0A3Q7H9U7 A0A3Q7H9U7 A0A3Q7H8E3 A0A3Q7H8E3 A0A3Q7H5E5 A0A3Q7H5E5 A0A3Q7H4R1 A0A3Q7H4R1 A0A3Q7H2V6 A0A3Q7H2V6 A0A3Q7H2J9 A0A3Q7H2J9 A0A3Q7GZB2 A0A3Q7GZB2 A0A3Q7GQY1 A0A3Q7GQY1 A0A3Q7GPR4 A0A3Q7GPR4 A0A3Q7GP12 A0A3Q7GP12 A0A3Q7GMS7 A0A3Q7GMS7 A0A3Q7GLL9 A0A3Q7GLL9 A0A3Q7GL31 A0A3Q7GL31 A0A3Q7GKV0 A0A3Q7GKV0 A0A3Q7GAS3 A0A3Q7GAS3 A0A3Q7G2B1 A0A3Q7G2B1 A0A3Q7G1B9 A0A3Q7G1B9 A0A3Q7G0H3 A0A3Q7G0H3 A0A3Q7G001 A0A3Q7G001 A0A3Q7FZS6 A0A3Q7FZS6 A0A3Q7FX15 A0A3Q7FX15 A0A3Q7FUZ6 A0A3Q7FUZ6 A0A3Q7FR37 A0A3Q7FR37 A0A3Q7FQH0 A0A3Q7FQH0 A0A3Q7FID0 A0A3Q7FID0 A0A3Q7FGA6 A0A3Q7FGA6 A0A3Q7FFU8 A0A3Q7FFU8 A0A3Q7FFH7 A0A3Q7FFH7 A0A3Q7F9R0 A0A3Q7F9R0 A0A3Q7F6Y5 A0A3Q7F6Y5 A0A3Q7F6K5 A0A3Q7F6K5 A0A3Q7F5B7 A0A3Q7F5B7 A0A3Q7F493 A0A3Q7F493 A0A3Q7EZ34 A0A3Q7EZ34 A0A3Q7ENM0 A0A3Q7ENM0 LSM4 LSM4 A0A3Q7END7 A0A3Q7END7 A0A3Q7EKF9 A0A3Q7EKF9 A0A3Q7EGR2 A0A3Q7EGR2 A0A3Q7E907 A0A3Q7E907
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
K4AZH1_SOLLCNop domain-containing protein. (217 aa)
Q53U41_SOLLCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (197 aa)
K4CRG8_SOLLCRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
K4CFA6_SOLLCPrp18 domain-containing protein. (223 aa)
A0A3Q7JM93Uncharacterized protein. (1021 aa)
A0A3Q7JFT1Sm domain-containing protein. (88 aa)
A0A3Q7J4Y2RRM domain-containing protein. (355 aa)
A0A3Q7J4E0Uncharacterized protein. (95 aa)
A0A3Q7IZM8Uncharacterized protein. (880 aa)
A0A3Q7IYM3Uncharacterized protein. (417 aa)
A0A3Q7IRU5Uncharacterized protein. (433 aa)
A0A3Q7IQI5Uncharacterized protein. (508 aa)
A0A3Q7IQD7Uncharacterized protein. (1388 aa)
A0A3Q7IPK6Small nuclear ribonucleoprotein G. (81 aa)
A0A3Q7INH3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
A0A3Q7IL51CPSF_A domain-containing protein. (1393 aa)
A0A3Q7IL47SF3b1 domain-containing protein. (684 aa)
A0A3Q7IKZ5Uncharacterized protein. (207 aa)
A0A3Q7IJG1Sm domain-containing protein. (90 aa)
A0A3Q7I980Uncharacterized protein. (980 aa)
A0A3Q7I7F7Uncharacterized protein. (364 aa)
A0A3Q7I6X8Small nuclear ribonucleoprotein Sm D2. (109 aa)
A0A3Q7I6B1Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
LSM4-2U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (154 aa)
A0A3Q7I437WD_REPEATS_REGION domain-containing protein. (774 aa)
A0A3Q7I1D8MPN domain-containing protein. (2384 aa)
A0A3Q7I0H0Tr-type G domain-containing protein. (987 aa)
A0A3Q7HYY1Sm domain-containing protein. (98 aa)
A0A3Q7HYL3Matrin-type domain-containing protein. (345 aa)
A0A3Q7HUR2Nop domain-containing protein. (483 aa)
A0A3Q7HQA1Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
A0A3Q7HM61Uncharacterized protein. (678 aa)
A0A3Q7HI28Nop domain-containing protein. (399 aa)
A0A3Q7HDU4SFM domain-containing protein. (337 aa)
A0A3Q7H9U7Uncharacterized protein. (1027 aa)
A0A3Q7H8E3Uncharacterized protein. (73 aa)
A0A3Q7H5E5Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
A0A3Q7H4R1Uncharacterized protein. (233 aa)
A0A3Q7H2V6U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
A0A3Q7H2J9Pectate lyase. (602 aa)
A0A3Q7GZB2Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
A0A3Q7GQY1PROCT domain-containing protein. (52 aa)
A0A3Q7GPR4Uncharacterized protein. (330 aa)
A0A3Q7GP12Uncharacterized protein. (252 aa)
A0A3Q7GMS7Small nuclear ribonucleoprotein-associated protein. (281 aa)
A0A3Q7GLL9Uncharacterized protein. (400 aa)
A0A3Q7GL31Small nuclear ribonucleoprotein G. (80 aa)
A0A3Q7GKV0Uncharacterized protein. (549 aa)
A0A3Q7GAS3Uncharacterized protein. (355 aa)
A0A3Q7G2B1WD_REPEATS_REGION domain-containing protein. (580 aa)
A0A3Q7G1B9Uncharacterized protein. (434 aa)
A0A3Q7G0H3CPSF_A domain-containing protein. (1175 aa)
A0A3Q7G001Uncharacterized protein. (142 aa)
A0A3Q7FZS6Uncharacterized protein. (635 aa)
A0A3Q7FX15Uncharacterized protein. (840 aa)
A0A3Q7FUZ6Uncharacterized protein. (398 aa)
A0A3Q7FR37PSP domain-containing protein. (558 aa)
A0A3Q7FQH0Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
A0A3Q7FID0Sm domain-containing protein. (146 aa)
A0A3Q7FGA6Uncharacterized protein. (142 aa)
A0A3Q7FFU8Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
A0A3Q7FFH7PSP domain-containing protein. (591 aa)
A0A3Q7F9R0RRM domain-containing protein. (478 aa)
A0A3Q7F6Y5Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
A0A3Q7F6K5Uncharacterized protein. (804 aa)
A0A3Q7F5B7Sm domain-containing protein. (166 aa)
A0A3Q7F493Uncharacterized protein. (1255 aa)
A0A3Q7EZ34Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
A0A3Q7ENM0U1-type domain-containing protein. (202 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (148 aa)
A0A3Q7END7Uncharacterized protein. (278 aa)
A0A3Q7EKF9Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (85 aa)
A0A3Q7EGR2U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (199 aa)
A0A3Q7E907RRM domain-containing protein. (123 aa)
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato
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