43 items (Solanum lycopersicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3Q7GLL9	Uncharacterized protein. (400 aa)
	A0A3Q7H2J9	Pectate lyase. (602 aa)
	A0A3Q7H4R1	Uncharacterized protein. (233 aa)
	A0A3Q7H2V6	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	A0A3Q7H5E5	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
	A0A3Q7H9U7	Uncharacterized protein. (1027 aa)
	A0A3Q7HI28	Nop domain-containing protein. (399 aa)
	A0A3Q7HQA1	Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
	A0A3Q7HUR2	Nop domain-containing protein. (483 aa)
	A0A3Q7HZC9	Uncharacterized protein. (398 aa)
	A0A3Q7I1D8	MPN domain-containing protein. (2384 aa)
	LSM4-2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (154 aa)
	A0A3Q7I6B1	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
	A0A3Q7I6X8	Small nuclear ribonucleoprotein Sm D2. (109 aa)
	A0A3Q7I7F7	Uncharacterized protein. (364 aa)
	A0A3Q7IJG1	Sm domain-containing protein. (90 aa)
	A0A3Q7IL51	CPSF_A domain-containing protein. (1393 aa)
	A0A3Q7INH3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	A0A3Q7IQI5	Uncharacterized protein. (508 aa)
	A0A3Q7ITI1	Sm domain-containing protein. (99 aa)
	A0A3Q7IYM3	Uncharacterized protein. (417 aa)
	A0A3Q7J4Y2	RRM domain-containing protein. (355 aa)
	A0A3Q7JFT1	Sm domain-containing protein. (88 aa)
	A0A3Q7JM93	Uncharacterized protein. (1021 aa)
	K4AZH1_SOLLC	Nop domain-containing protein. (217 aa)
	A0A3Q7G0H3	CPSF_A domain-containing protein. (1175 aa)
	A0A3Q7GZB2	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	A0A3Q7GQY1	PROCT domain-containing protein. (52 aa)
	A0A3Q7GPR4	Uncharacterized protein. (330 aa)
	A0A3Q7GMS7	Small nuclear ribonucleoprotein-associated protein. (281 aa)
	A0A3Q7GAS3	Uncharacterized protein. (355 aa)
	A0A3Q7EL22	NOSIC domain-containing protein. (91 aa)
	A0A3Q7EM54	Uncharacterized protein. (411 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (148 aa)
	A0A3Q7F0U0	Uncharacterized protein. (551 aa)
	A0A3Q7F5B7	Sm domain-containing protein. (166 aa)
	A0A3Q7F680	Uncharacterized protein. (324 aa)
	A0A3Q7F9R0	RRM domain-containing protein. (478 aa)
	A0A3Q7FGA6	Uncharacterized protein. (142 aa)
	A0A3Q7FID0	Sm domain-containing protein. (146 aa)
	A0A3Q7FQH0	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	A0A3Q7FZS6	Uncharacterized protein. (635 aa)
	A0A3Q7G001	Uncharacterized protein. (142 aa)

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A3Q7EL22	A0A3Q7F0U0	A0A3Q7EL22	A0A3Q7F0U0	NOSIC domain-containing protein.	Uncharacterized protein.	0.871
A0A3Q7EL22	A0A3Q7F5B7	A0A3Q7EL22	A0A3Q7F5B7	NOSIC domain-containing protein.	Sm domain-containing protein.	0.898
A0A3Q7EL22	A0A3Q7F680	A0A3Q7EL22	A0A3Q7F680	NOSIC domain-containing protein.	Uncharacterized protein.	0.540
A0A3Q7EL22	A0A3Q7FGA6	A0A3Q7EL22	A0A3Q7FGA6	NOSIC domain-containing protein.	Uncharacterized protein.	0.913
A0A3Q7EL22	A0A3Q7FID0	A0A3Q7EL22	A0A3Q7FID0	NOSIC domain-containing protein.	Sm domain-containing protein.	0.912
A0A3Q7EL22	A0A3Q7FQH0	A0A3Q7EL22	A0A3Q7FQH0	NOSIC domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.937
A0A3Q7EL22	A0A3Q7FZS6	A0A3Q7EL22	A0A3Q7FZS6	NOSIC domain-containing protein.	Uncharacterized protein.	0.755
A0A3Q7EL22	A0A3Q7G001	A0A3Q7EL22	A0A3Q7G001	NOSIC domain-containing protein.	Uncharacterized protein.	0.913
A0A3Q7EL22	A0A3Q7G0H3	A0A3Q7EL22	A0A3Q7G0H3	NOSIC domain-containing protein.	CPSF_A domain-containing protein.	0.804
A0A3Q7EL22	A0A3Q7GMS7	A0A3Q7EL22	A0A3Q7GMS7	NOSIC domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.898
A0A3Q7EL22	A0A3Q7GPR4	A0A3Q7EL22	A0A3Q7GPR4	NOSIC domain-containing protein.	Uncharacterized protein.	0.618
A0A3Q7EL22	A0A3Q7GQY1	A0A3Q7EL22	A0A3Q7GQY1	NOSIC domain-containing protein.	PROCT domain-containing protein.	0.858
A0A3Q7EL22	A0A3Q7GZB2	A0A3Q7EL22	A0A3Q7GZB2	NOSIC domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.937
A0A3Q7EL22	A0A3Q7H2J9	A0A3Q7EL22	A0A3Q7H2J9	NOSIC domain-containing protein.	Pectate lyase.	0.880
A0A3Q7EL22	A0A3Q7H2V6	A0A3Q7EL22	A0A3Q7H2V6	NOSIC domain-containing protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.966
A0A3Q7EL22	A0A3Q7H4R1	A0A3Q7EL22	A0A3Q7H4R1	NOSIC domain-containing protein.	Uncharacterized protein.	0.664
A0A3Q7EL22	A0A3Q7H5E5	A0A3Q7EL22	A0A3Q7H5E5	NOSIC domain-containing protein.	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	0.912
A0A3Q7EL22	A0A3Q7HI28	A0A3Q7EL22	A0A3Q7HI28	NOSIC domain-containing protein.	Nop domain-containing protein.	0.551
A0A3Q7EL22	A0A3Q7HQA1	A0A3Q7EL22	A0A3Q7HQA1	NOSIC domain-containing protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.755
A0A3Q7EL22	A0A3Q7HUR2	A0A3Q7EL22	A0A3Q7HUR2	NOSIC domain-containing protein.	Nop domain-containing protein.	0.545

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