67 items (Solanum lycopersicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A3Q7EDD4	Uncharacterized protein. (132 aa)
	A0A3Q7EL22	NOSIC domain-containing protein. (91 aa)
	A0A3Q7EM54	Uncharacterized protein. (411 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (148 aa)
	A0A3Q7EZ34	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
	A0A3Q7F0U0	Uncharacterized protein. (551 aa)
	A0A3Q7F5B7	Sm domain-containing protein. (166 aa)
	A0A3Q7F680	Uncharacterized protein. (324 aa)
	A0A3Q7F6Y5	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
	A0A3Q7F9R0	RRM domain-containing protein. (478 aa)
	A0A3Q7FFU8	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
	A0A3Q7FGA6	Uncharacterized protein. (142 aa)
	A0A3Q7FID0	Sm domain-containing protein. (146 aa)
	A0A3Q7FKZ3	Uncharacterized protein. (599 aa)
	A0A3Q7FQH0	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	A0A3Q7FUV3	Uncharacterized protein. (820 aa)
	A0A3Q7FZS6	Uncharacterized protein. (635 aa)
	A0A3Q7G001	Uncharacterized protein. (142 aa)
	A0A3Q7G0H3	CPSF_A domain-containing protein. (1175 aa)
	A0A3Q7GAS3	Uncharacterized protein. (355 aa)
	A0A3Q7GKV0	Uncharacterized protein. (549 aa)
	A0A3Q7GL31	Small nuclear ribonucleoprotein G. (80 aa)
	A0A3Q7GLL9	Uncharacterized protein. (400 aa)
	A0A3Q7GMS7	Small nuclear ribonucleoprotein-associated protein. (281 aa)
	A0A3Q7GP12	Uncharacterized protein. (252 aa)
	A0A3Q7GPR4	Uncharacterized protein. (330 aa)
	A0A3Q7GQY1	PROCT domain-containing protein. (52 aa)
	A0A3Q7GY57	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
	A0A3Q7GZB2	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	A0A3Q7H2J9	Pectate lyase. (602 aa)
	A0A3Q7H2V6	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	A0A3Q7H4R1	Uncharacterized protein. (233 aa)
	A0A3Q7H590	RING-type domain-containing protein. (431 aa)
	A0A3Q7H5E5	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
	A0A3Q7H9U7	Uncharacterized protein. (1027 aa)
	A0A3Q7HI28	Nop domain-containing protein. (399 aa)
	A0A3Q7HJK9	RING-type domain-containing protein. (418 aa)
	A0A3Q7HM61	Uncharacterized protein. (678 aa)
	A0A3Q7HQA1	Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
	A0A3Q7HUR2	Nop domain-containing protein. (483 aa)
	A0A3Q7HYY1	Sm domain-containing protein. (98 aa)
	A0A3Q7HZC9	Uncharacterized protein. (398 aa)
	A0A3Q7I1D8	MPN domain-containing protein. (2384 aa)
	A0A3Q7I259	Uncharacterized protein. (493 aa)
	A0A3Q7I4K2	RING-type domain-containing protein. (430 aa)
	A0A3Q7I508	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (115 aa)
	LSM4-2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (154 aa)
	A0A3Q7I6B1	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
	A0A3Q7I6T6	Uncharacterized protein. (213 aa)
	A0A3Q7I6X8	Small nuclear ribonucleoprotein Sm D2. (109 aa)
	A0A3Q7I7F7	Uncharacterized protein. (364 aa)
	A0A3Q7I8L6	Uncharacterized protein. (199 aa)
	A0A3Q7IJG1	Sm domain-containing protein. (90 aa)
	A0A3Q7IL51	CPSF_A domain-containing protein. (1393 aa)
	A0A3Q7INH3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	A0A3Q7IPK6	Small nuclear ribonucleoprotein G. (81 aa)
	A0A3Q7IQI5	Uncharacterized protein. (508 aa)
	A0A3Q7ITI1	Sm domain-containing protein. (99 aa)
	A0A3Q7IYM3	Uncharacterized protein. (417 aa)
	A0A3Q7J4Y2	RRM domain-containing protein. (355 aa)
	A0A3Q7J7E9	Uncharacterized protein. (222 aa)
	A0A3Q7JFT1	Sm domain-containing protein. (88 aa)
	A0A3Q7JM93	Uncharacterized protein. (1021 aa)
	A0A3Q7JS35	Sm domain-containing protein. (71 aa)
	K4AZH1_SOLLC	Nop domain-containing protein. (217 aa)
	K4C5Y6_SOLLC	Uncharacterized protein. (176 aa)
	K4DDP0_SOLLC	Uncharacterized protein. (222 aa)

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A3Q7EDD4	A0A3Q7EL22	A0A3Q7EDD4	A0A3Q7EL22	Uncharacterized protein.	NOSIC domain-containing protein.	0.540
A0A3Q7EDD4	A0A3Q7EZ34	A0A3Q7EDD4	A0A3Q7EZ34	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.540
A0A3Q7EDD4	A0A3Q7F5B7	A0A3Q7EDD4	A0A3Q7F5B7	Uncharacterized protein.	Sm domain-containing protein.	0.544
A0A3Q7EDD4	A0A3Q7F680	A0A3Q7EDD4	A0A3Q7F680	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A3Q7EDD4	A0A3Q7F6Y5	A0A3Q7EDD4	A0A3Q7F6Y5	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.540
A0A3Q7EDD4	A0A3Q7F9R0	A0A3Q7EDD4	A0A3Q7F9R0	Uncharacterized protein.	RRM domain-containing protein.	0.544
A0A3Q7EDD4	A0A3Q7FFU8	A0A3Q7EDD4	A0A3Q7FFU8	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.540
A0A3Q7EDD4	A0A3Q7FGA6	A0A3Q7EDD4	A0A3Q7FGA6	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A3Q7EDD4	A0A3Q7FID0	A0A3Q7EDD4	A0A3Q7FID0	Uncharacterized protein.	Sm domain-containing protein.	0.547
A0A3Q7EDD4	A0A3Q7FKZ3	A0A3Q7EDD4	A0A3Q7FKZ3	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A3Q7EDD4	A0A3Q7FQH0	A0A3Q7EDD4	A0A3Q7FQH0	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.540
A0A3Q7EDD4	A0A3Q7FUV3	A0A3Q7EDD4	A0A3Q7FUV3	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A3Q7EDD4	A0A3Q7G001	A0A3Q7EDD4	A0A3Q7G001	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A3Q7EDD4	A0A3Q7G0H3	A0A3Q7EDD4	A0A3Q7G0H3	Uncharacterized protein.	CPSF_A domain-containing protein.	0.544
A0A3Q7EDD4	A0A3Q7GAS3	A0A3Q7EDD4	A0A3Q7GAS3	Uncharacterized protein.	Uncharacterized protein.	0.544
A0A3Q7EDD4	A0A3Q7GKV0	A0A3Q7EDD4	A0A3Q7GKV0	Uncharacterized protein.	Uncharacterized protein.	0.544
A0A3Q7EDD4	A0A3Q7GL31	A0A3Q7EDD4	A0A3Q7GL31	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.540
A0A3Q7EDD4	A0A3Q7GLL9	A0A3Q7EDD4	A0A3Q7GLL9	Uncharacterized protein.	Uncharacterized protein.	0.544
A0A3Q7EDD4	A0A3Q7GMS7	A0A3Q7EDD4	A0A3Q7GMS7	Uncharacterized protein.	Small nuclear ribonucleoprotein-associated protein.	0.544
A0A3Q7EDD4	A0A3Q7GPR4	A0A3Q7EDD4	A0A3Q7GPR4	Uncharacterized protein.	Uncharacterized protein.	0.550

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