STRINGSTRING
LSM4 LSM4 A0A3Q7EYR9 A0A3Q7EYR9 A0A3Q7EZ34 A0A3Q7EZ34 A0A3Q7EZB3 A0A3Q7EZB3 A0A3Q7F6Y5 A0A3Q7F6Y5 A0A3Q7F9T8 A0A3Q7F9T8 A0A3Q7FFU8 A0A3Q7FFU8 A0A3Q7FGA6 A0A3Q7FGA6 A0A3Q7FQH0 A0A3Q7FQH0 A0A3Q7G001 A0A3Q7G001 A0A3Q7GL31 A0A3Q7GL31 A0A3Q7GZB2 A0A3Q7GZB2 A0A3Q7H2V6 A0A3Q7H2V6 A0A3Q7H5E5 A0A3Q7H5E5 A0A3Q7I508 A0A3Q7I508 LSM4-2 LSM4-2 A0A3Q7I6B1 A0A3Q7I6B1 A0A3Q7I6X8 A0A3Q7I6X8 A0A3Q7I9V8 A0A3Q7I9V8 A0A3Q7IJG1 A0A3Q7IJG1 A0A3Q7INH3 A0A3Q7INH3 A0A3Q7IPK6 A0A3Q7IPK6 A0A3Q7JFT1 A0A3Q7JFT1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (148 aa)
A0A3Q7EYR9U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (560 aa)
A0A3Q7EZ34Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
A0A3Q7EZB3Nuclear cap-binding protein subunit 2. (257 aa)
A0A3Q7F6Y5Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
A0A3Q7F9T8U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (559 aa)
A0A3Q7FFU8Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
A0A3Q7FGA6Uncharacterized protein. (142 aa)
A0A3Q7FQH0Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
A0A3Q7G001Uncharacterized protein. (142 aa)
A0A3Q7GL31Small nuclear ribonucleoprotein G. (80 aa)
A0A3Q7GZB2Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
A0A3Q7H2V6U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
A0A3Q7H5E5Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
A0A3Q7I508Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (115 aa)
LSM4-2U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (154 aa)
A0A3Q7I6B1Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
A0A3Q7I6X8Small nuclear ribonucleoprotein Sm D2. (109 aa)
A0A3Q7I9V8G-patch domain-containing protein. (867 aa)
A0A3Q7IJG1Sm domain-containing protein. (90 aa)
A0A3Q7INH3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
A0A3Q7IPK6Small nuclear ribonucleoprotein G. (81 aa)
A0A3Q7JFT1Sm domain-containing protein. (88 aa)
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato
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