(48 nodes) (2022) De novo full length transcriptome analysis and gene expression profiling to identify genes involved in phenylethanol glycosides biosynthesis in Cistanche tubulosa. network (Solanum lycopersicum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	CCR1	Cinnamoyl-CoA reductase. (332 aa)
	A0A3Q7EQU5	Uncharacterized protein. (377 aa)
	A0A3Q7ESA3	Uncharacterized protein. (257 aa)
	A0A3Q7F0V5	Hydrolase_4 domain-containing protein. (373 aa)
	A0A3Q7F1M4	Hydrolase_4 domain-containing protein. (319 aa)
	A0A3Q7FDK5	Aminotran_1_2 domain-containing protein. (535 aa)
	A0A3Q7FDU8	Uncharacterized protein. (242 aa)
	A0A3Q7FDV2	Uncharacterized protein. (304 aa)
	A0A3Q7FFN0	Uncharacterized protein. (234 aa)
	A0A3Q7FGA3	Phenylalanine ammonia-lyase. (484 aa)
	A0A3Q7FUU7	Hydrolase_4 domain-containing protein. (327 aa)
	A0A3Q7FWL3	Aminotran_1_2 domain-containing protein. (414 aa)
	Actin	Uncharacterized protein. (377 aa)
	A0A3Q7G9H2	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (357 aa)
	A0A3Q7GDH4	Hydrolase_4 domain-containing protein. (397 aa)
	A0A3Q7GIN5	Uncharacterized protein. (146 aa)
	A0A3Q7GLK0	Uncharacterized protein. (121 aa)
	A0A3Q7GPF4	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (361 aa)
	A0A3Q7GQI7	Hydrolase_4 domain-containing protein. (319 aa)
	A0A3Q7GQV0	Hydrolase_4 domain-containing protein. (335 aa)
	PAL2	Phenylalanine ammonia-lyase. (709 aa)
	A0A3Q7H4X1	Methyltransf_2 domain-containing protein. (230 aa)
	A0A3Q7HC56	Aminotran_1_2 domain-containing protein. (422 aa)
	A0A3Q7HD29	Aspartate aminotransferase. (425 aa)
	A0A3Q7HEN9	Aminotran_1_2 domain-containing protein. (419 aa)
	A0A3Q7HNA9	Aspartate aminotransferase. (462 aa)
	CuAO	Amine oxidase. (721 aa)
	A0A3Q7HT02	Aminotran_1_2 domain-containing protein. (548 aa)
	A0A3Q7HW47	Uncharacterized protein; Belongs to the PAL/histidase family. (1418 aa)
	A0A3Q7HYF0	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (361 aa)
	A0A3Q7I4P2	Aspartate aminotransferase. (406 aa)
	CTOMT1	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (373 aa)
	A0A3Q7ID95	Uncharacterized protein; Belongs to the PAL/histidase family. (1391 aa)
	A0A3Q7IGY7	Uncharacterized protein. (245 aa)
	A0A3Q7IPA2	Phenylalanine ammonia-lyase. (711 aa)
	A0A3Q7J1H6	Hydrolase_4 domain-containing protein. (352 aa)
	A0A3Q7J620	Aminotran_1_2 domain-containing protein. (421 aa)
	A0A3Q7JDC4	Aminotran_1_2 domain-containing protein. (423 aa)
	A0A3Q7JDQ4	Aminotran_1_2 domain-containing protein. (344 aa)
	A0A494GAA4	Phenylalanine ammonia-lyase. (582 aa)
	K4C0B3_SOLLC	Uncharacterized protein. (154 aa)
	K4C0H5_SOLLC	Uncharacterized protein. (47 aa)
	AnthOMT	Anthocyanin O-methyltransferase. (235 aa)
	J2	MADS-box protein J2; MADS-box transcription factor that acts redundantly with EJ2 to control meristem maturation and inflorescence architecture. (250 aa)
	PAL5	Phenylalanine ammonia-lyase; This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton. (721 aa)
	PAL	Phenylalanine ammonia-lyase; This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton; Belongs to the PAL/histidase family. (704 aa)
	THM18	THM18 protein. (265 aa)
	CCR2	Cinnamoyl-CoA reductase. (332 aa)

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A3Q7EQU5	A0A3Q7FGA3	A0A3Q7EQU5	A0A3Q7FGA3	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.649
A0A3Q7EQU5	A0A3Q7HW47	A0A3Q7EQU5	A0A3Q7HW47	Uncharacterized protein.	Uncharacterized protein; Belongs to the PAL/histidase family.	0.649
A0A3Q7EQU5	A0A3Q7ID95	A0A3Q7EQU5	A0A3Q7ID95	Uncharacterized protein.	Uncharacterized protein; Belongs to the PAL/histidase family.	0.649
A0A3Q7EQU5	A0A3Q7IPA2	A0A3Q7EQU5	A0A3Q7IPA2	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.649
A0A3Q7EQU5	A0A494GAA4	A0A3Q7EQU5	A0A494GAA4	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.649
A0A3Q7EQU5	J2	A0A3Q7EQU5	K4DEK0	Uncharacterized protein.	MADS-box protein J2; MADS-box transcription factor that acts redundantly with EJ2 to control meristem maturation and inflorescence architecture.	0.431
A0A3Q7EQU5	PAL	A0A3Q7EQU5	P35511	Uncharacterized protein.	Phenylalanine ammonia-lyase; This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton; Belongs to the PAL/histidase family.	0.649
A0A3Q7EQU5	PAL2	A0A3Q7EQU5	A0A3Q7GQY4	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.711
A0A3Q7EQU5	PAL5	A0A3Q7EQU5	P26600	Uncharacterized protein.	Phenylalanine ammonia-lyase; This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton.	0.711
A0A3Q7ESA3	A0A3Q7F0V5	A0A3Q7ESA3	A0A3Q7F0V5	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.624
A0A3Q7ESA3	A0A3Q7F1M4	A0A3Q7ESA3	A0A3Q7F1M4	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.548
A0A3Q7ESA3	A0A3Q7FGA3	A0A3Q7ESA3	A0A3Q7FGA3	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.721
A0A3Q7ESA3	A0A3Q7FUU7	A0A3Q7ESA3	A0A3Q7FUU7	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.656
A0A3Q7ESA3	A0A3Q7G9H2	A0A3Q7ESA3	A0A3Q7G9H2	Uncharacterized protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.782
A0A3Q7ESA3	A0A3Q7GDH4	A0A3Q7ESA3	A0A3Q7GDH4	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.624
A0A3Q7ESA3	A0A3Q7GPF4	A0A3Q7ESA3	A0A3Q7GPF4	Uncharacterized protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.782
A0A3Q7ESA3	A0A3Q7GQI7	A0A3Q7ESA3	A0A3Q7GQI7	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.624
A0A3Q7ESA3	A0A3Q7GQV0	A0A3Q7ESA3	A0A3Q7GQV0	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.624
A0A3Q7ESA3	A0A3Q7H4X1	A0A3Q7ESA3	A0A3Q7H4X1	Uncharacterized protein.	Methyltransf_2 domain-containing protein.	0.738
A0A3Q7ESA3	A0A3Q7HW47	A0A3Q7ESA3	A0A3Q7HW47	Uncharacterized protein.	Uncharacterized protein; Belongs to the PAL/histidase family.	0.721

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