(7 nodes) (2023) Identification of the global diurnal rhythmic transcripts, transcription factors and time-of-day specific cis elements in Chenopodium quinoa. network (Solanum lycopersicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cry1b	Cryptochrome 1b. (583 aa)
	PHYE	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1137 aa)
	A0A3Q7G7D9	Uncharacterized protein. (1167 aa)
	CRY1a	Uncharacterized protein. (960 aa)
	PhyA	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1176 aa)
	A0A3Q7JAG5	Uncharacterized protein. (1167 aa)
	THM18	THM18 protein. (265 aa)

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum L., Solanum lycopersicum var. humboldtii, tomato

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A3Q7G7D9	A0A3Q7JAG5	A0A3Q7G7D9	A0A3Q7JAG5	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A3Q7G7D9	CRY1a	A0A3Q7G7D9	A0A3Q7H047	Uncharacterized protein.	Uncharacterized protein.	0.826
A0A3Q7G7D9	Cry1b	A0A3Q7G7D9	Q93VS0	Uncharacterized protein.	Cryptochrome 1b.	0.788
A0A3Q7G7D9	PHYE	A0A3Q7G7D9	A0A3Q7F2U3	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.759
A0A3Q7G7D9	PhyA	A0A3Q7G7D9	A0A3Q7IF42	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.874
A0A3Q7JAG5	A0A3Q7G7D9	A0A3Q7JAG5	A0A3Q7G7D9	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A3Q7JAG5	CRY1a	A0A3Q7JAG5	A0A3Q7H047	Uncharacterized protein.	Uncharacterized protein.	0.826
A0A3Q7JAG5	Cry1b	A0A3Q7JAG5	Q93VS0	Uncharacterized protein.	Cryptochrome 1b.	0.788
A0A3Q7JAG5	PHYE	A0A3Q7JAG5	A0A3Q7F2U3	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.759
A0A3Q7JAG5	PhyA	A0A3Q7JAG5	A0A3Q7IF42	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.874
CRY1a	A0A3Q7G7D9	A0A3Q7H047	A0A3Q7G7D9	Uncharacterized protein.	Uncharacterized protein.	0.826
CRY1a	A0A3Q7JAG5	A0A3Q7H047	A0A3Q7JAG5	Uncharacterized protein.	Uncharacterized protein.	0.826
CRY1a	Cry1b	A0A3Q7H047	Q93VS0	Uncharacterized protein.	Cryptochrome 1b.	0.902
CRY1a	PHYE	A0A3Q7H047	A0A3Q7F2U3	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.801
CRY1a	PhyA	A0A3Q7H047	A0A3Q7IF42	Uncharacterized protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.915
Cry1b	A0A3Q7G7D9	Q93VS0	A0A3Q7G7D9	Cryptochrome 1b.	Uncharacterized protein.	0.788
Cry1b	A0A3Q7JAG5	Q93VS0	A0A3Q7JAG5	Cryptochrome 1b.	Uncharacterized protein.	0.788
Cry1b	CRY1a	Q93VS0	A0A3Q7H047	Cryptochrome 1b.	Uncharacterized protein.	0.902
Cry1b	PHYE	Q93VS0	A0A3Q7F2U3	Cryptochrome 1b.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.836
Cry1b	PhyA	Q93VS0	A0A3Q7IF42	Cryptochrome 1b.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.905

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About