38 items (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC104213427	Uncharacterized protein LOC104213427. (117 aa)
	LOC104212552	Ninja-family protein AFP1-like isoform X1. (393 aa)
	LOC104211705	Uncharacterized protein LOC104211705. (455 aa)
	LOC104215354	Metallothionein-like protein type 2. (74 aa)
	LOC104210221	Glycine-rich cell wall structural protein-like. (146 aa)
	LOC104215590	Uncharacterized protein LOC104215590. (181 aa)
	LOC104215691	Defensin-like protein 1; Belongs to the DEFL family. (76 aa)
	LOC104215799	Uncharacterized protein LOC104215799. (730 aa)
	LOC104220422	Uncharacterized protein LOC104220422. (98 aa)
	LOC104218519	Uncharacterized protein LOC104218519. (116 aa)
	LOC104216450	Uncharacterized protein LOC104216450. (118 aa)
	LOC104216199	Uncharacterized protein LOC104216199 isoform X1. (111 aa)
	LOC104223670	Phytosulfokines 3-like. (84 aa)
	LOC104219866	Defensin-like protein isoform X1; Belongs to the DEFL family. (80 aa)
	LOC104221686	Uncharacterized protein LOC104221686 isoform X1. (517 aa)
	LOC104226034	Uncharacterized protein LOC104226034. (150 aa)
	LOC104224861	Uncharacterized protein LOC104224861. (117 aa)
	LOC104224862	Uncharacterized protein LOC104224862. (117 aa)
	LOC104230167	Uncharacterized protein LOC104230167. (111 aa)
	LOC104226382	Trichohyalin-like. (688 aa)
	LOC104226180	Glucan endo-1,3-beta-glucosidase 13; Belongs to the glycosyl hydrolase 17 family. (496 aa)
	LOC104229164	Defensin-like protein 1; Belongs to the DEFL family. (74 aa)
	LOC104228748	Uncharacterized protein LOC104228748 isoform X1. (713 aa)
	LOC104234002	Telomere repeat-binding protein 3-like isoform X1. (695 aa)
	LOC104231966	Uncharacterized protein LOC104231966. (98 aa)
	LOC104233133	Uncharacterized protein LOC104233133. (72 aa)
	LOC104235861	Photosystem II 5 kDa protein, chloroplastic. (105 aa)
	LOC104237706	NAC domain-containing protein 4-like isoform X1. (473 aa)
	LOC104240486	Putative transcription factor bHLH041 isoform X1. (539 aa)
	LOC104241048	Metallothionein-like protein type 2. (74 aa)
	LOC104244274	Uncharacterized protein LOC104244274. (221 aa)
	LOC104244166	Aspartic proteinase; Belongs to the peptidase A1 family. (512 aa)
	LOC104246435	Uncharacterized protein LOC104246435. (193 aa)
	LOC104244880	Metallothionein-like protein type 2. (81 aa)
	LOC104249081	Uncharacterized protein At3g15000, mitochondrial-like. (397 aa)
	LOC104247366	Uncharacterized protein At3g15000, mitochondrial. (410 aa)
	LOC104248694	Uncharacterized protein LOC104248694. (117 aa)
	LOC104248974	Putative invertase inhibitor. (189 aa)

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104210221	LOC104213427	A0A1U7V6L0	A0A1U7UYY8	Glycine-rich cell wall structural protein-like.	Uncharacterized protein LOC104213427.	0.439
LOC104210221	LOC104215354	A0A1U7V6L0	A0A1U7V5I6	Glycine-rich cell wall structural protein-like.	Metallothionein-like protein type 2.	0.523
LOC104210221	LOC104215590	A0A1U7V6L0	A0A1U7VFR7	Glycine-rich cell wall structural protein-like.	Uncharacterized protein LOC104215590.	0.482
LOC104210221	LOC104215799	A0A1U7V6L0	A0A1U7VNS2	Glycine-rich cell wall structural protein-like.	Uncharacterized protein LOC104215799.	0.448
LOC104210221	LOC104218519	A0A1U7V6L0	A0A1U7VQX3	Glycine-rich cell wall structural protein-like.	Uncharacterized protein LOC104218519.	0.463
LOC104210221	LOC104220422	A0A1U7V6L0	A0A1U7VNW5	Glycine-rich cell wall structural protein-like.	Uncharacterized protein LOC104220422.	0.464
LOC104210221	LOC104223670	A0A1U7V6L0	A0A1U7W080	Glycine-rich cell wall structural protein-like.	Phytosulfokines 3-like.	0.608
LOC104210221	LOC104224861	A0A1U7V6L0	A0A1U7WJP6	Glycine-rich cell wall structural protein-like.	Uncharacterized protein LOC104224861.	0.440
LOC104210221	LOC104224862	A0A1U7V6L0	A0A1U7WKV0	Glycine-rich cell wall structural protein-like.	Uncharacterized protein LOC104224862.	0.453
LOC104210221	LOC104226382	A0A1U7V6L0	A0A1U7WPQ7	Glycine-rich cell wall structural protein-like.	Trichohyalin-like.	0.466
LOC104210221	LOC104230167	A0A1U7V6L0	A0A1U7WMM9	Glycine-rich cell wall structural protein-like.	Uncharacterized protein LOC104230167.	0.484
LOC104210221	LOC104231966	A0A1U7V6L0	A0A1U7X111	Glycine-rich cell wall structural protein-like.	Uncharacterized protein LOC104231966.	0.464
LOC104210221	LOC104233133	A0A1U7V6L0	A0A1U7XE79	Glycine-rich cell wall structural protein-like.	Uncharacterized protein LOC104233133.	0.503
LOC104210221	LOC104235861	A0A1U7V6L0	A0A1U7XEC0	Glycine-rich cell wall structural protein-like.	Photosystem II 5 kDa protein, chloroplastic.	0.453
LOC104210221	LOC104241048	A0A1U7V6L0	A0A1U7XXB3	Glycine-rich cell wall structural protein-like.	Metallothionein-like protein type 2.	0.520
LOC104210221	LOC104244274	A0A1U7V6L0	A0A1U7Y1C6	Glycine-rich cell wall structural protein-like.	Uncharacterized protein LOC104244274.	0.532
LOC104210221	LOC104244880	A0A1U7V6L0	A0A1U7YHH8	Glycine-rich cell wall structural protein-like.	Metallothionein-like protein type 2.	0.529
LOC104210221	LOC104246435	A0A1U7V6L0	A0A1U7YF14	Glycine-rich cell wall structural protein-like.	Uncharacterized protein LOC104246435.	0.419
LOC104210221	LOC104247366	A0A1U7V6L0	A0A1U7YR06	Glycine-rich cell wall structural protein-like.	Uncharacterized protein At3g15000, mitochondrial.	0.487
LOC104210221	LOC104248694	A0A1U7V6L0	A0A1U7YX30	Glycine-rich cell wall structural protein-like.	Uncharacterized protein LOC104248694.	0.441