STRINGSTRING
LOC104210042 LOC104210042 LOC104211737 LOC104211737 LOC104210355 LOC104210355 LOC104213116 LOC104213116 LOC104210440 LOC104210440 LOC104213599 LOC104213599 LOC104212114 LOC104212114 LOC104211157 LOC104211157 LOC104212655 LOC104212655 LOC104212107 LOC104212107 LOC104212161 LOC104212161 LOC104213475 LOC104213475 LOC104215619 LOC104215619 LOC104215818 LOC104215818 LOC104213344 LOC104213344 LOC104211195 LOC104211195 LOC104211293 LOC104211293 LOC104213602 LOC104213602 LOC104215047 LOC104215047 LOC104211380 LOC104211380 LOC104211804 LOC104211804 LOC104214530 LOC104214530 LOC104215804 LOC104215804 LOC104215265 LOC104215265 LOC104213073 LOC104213073 LOC104212724 LOC104212724 LOC104216742 LOC104216742 LOC104216793 LOC104216793 LOC104218290 LOC104218290 LOC104218832 LOC104218832 LOC104217940 LOC104217940 LOC104219356 LOC104219356 LOC104215168 LOC104215168 LOC104215049 LOC104215049 LOC104217821 LOC104217821 LOC104215779 LOC104215779 LOC104220904 LOC104220904 LOC104216693 LOC104216693 LOC104219231 LOC104219231 LOC104220893 LOC104220893 LOC104217877 LOC104217877 LOC104221308 LOC104221308 LOC104221311 LOC104221311 LOC104217996 LOC104217996 LOC104220179 LOC104220179 LOC104221500 LOC104221500 LOC104220532 LOC104220532 LOC104221183 LOC104221183 LOC104222652 LOC104222652 LOC104222878 LOC104222878 LOC104223505 LOC104223505 LOC104222369 LOC104222369 LOC104222729 LOC104222729 LOC104221271 LOC104221271 LOC104224708 LOC104224708 LOC104224912 LOC104224912 LOC104221588 LOC104221588 LOC104224351 LOC104224351 LOC104222971 LOC104222971 LOC104227436 LOC104227436 LOC104225235 LOC104225235 LOC104225464 LOC104225464 LOC104225591 LOC104225591 LOC104225737 LOC104225737 LOC104223607 LOC104223607 LOC104224009 LOC104224009 LOC104224074 LOC104224074 LOC104227912 LOC104227912 LOC104226961 LOC104226961 LOC104228513 LOC104228513 LOC104225855 LOC104225855 LOC104230287 LOC104230287 LOC104230335 LOC104230335 LOC104226108 LOC104226108 LOC104228474 LOC104228474 LOC104227356 LOC104227356 LOC104227429 LOC104227429 LOC104230192 LOC104230192 LOC104230418 LOC104230418 LOC104228336 LOC104228336 LOC104231095 LOC104231095 LOC104229100 LOC104229100 LOC104229462 LOC104229462 LOC104229622 LOC104229622 LOC104233282 LOC104233282 LOC104232379 LOC104232379 LOC104233420 LOC104233420 LOC104235155 LOC104235155 LOC104231017 LOC104231017 LOC104233749 LOC104233749 LOC104231627 LOC104231627 LOC104234365 LOC104234365 LOC104236946 LOC104236946 LOC104233325 LOC104233325 LOC104236701 LOC104236701 LOC104235836 LOC104235836 LOC104233160 LOC104233160 LOC104233208 LOC104233208 LOC104238093 LOC104238093 LOC104233661 LOC104233661 LOC104238709 LOC104238709 LOC104238938 LOC104238938 LOC104238040 LOC104238040 LOC104234644 LOC104234644 LOC104237445 LOC104237445 LOC104235264 LOC104235264 LOC104235333 LOC104235333 LOC104238239 LOC104238239 LOC104236065 LOC104236065 LOC104236418 LOC104236418 LOC104240818 LOC104240818 LOC104240180 LOC104240180 LOC104236941 LOC104236941 LOC104241234 LOC104241234 LOC104240265 LOC104240265 LOC104241392 LOC104241392 LOC104240642 LOC104240642 LOC104237457 LOC104237457 LOC104237284 LOC104237284 LOC104242149 LOC104242149 LOC104240106 LOC104240106 LOC104237734 LOC104237734 LOC104240542 LOC104240542 LOC104241064 LOC104241064 LOC104238888 LOC104238888 LOC104239324 LOC104239324 LOC104243879 LOC104243879 LOC104242211 LOC104242211 LOC104243777 LOC104243777 LOC104240046 LOC104240046 LOC104243966 LOC104243966 LOC104240807 LOC104240807 LOC104240472 LOC104240472 LOC104244661 LOC104244661 LOC104245596 LOC104245596 LOC104241590 LOC104241590 LOC104241859 LOC104241859 LOC104246038 LOC104246038 LOC104244216 LOC104244216 LOC104241629 LOC104241629 LOC104246186 LOC104246186 LOC104244641 LOC104244641 LOC104245935 LOC104245935 LOC104247135 LOC104247135 LOC104245365 LOC104245365 LOC104246606 LOC104246606 LOC104245829 LOC104245829 LOC104243595 LOC104243595 LOC104247960 LOC104247960 LOC104243810 LOC104243810 LOC104248234 LOC104248234 LOC104244587 LOC104244587 LOC104247854 LOC104247854 LOC104244662 LOC104244662 LOC104244737 LOC104244737 LOC104247417 LOC104247417 LOC104249900 LOC104249900 LOC104248341 LOC104248341 LOC104245842 LOC104245842 LOC104249661 LOC104249661 LOC104248966 LOC104248966 LOC104249922 LOC104249922 LOC104249209 LOC104249209 LOC104249448 LOC104249448 LOC104247371 LOC104247371 LOC104247777 LOC104247777 LOC104247895 LOC104247895
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC104210042Splicing factor 3A subunit 3. (510 aa)
LOC104211737Protein CWC15 homolog. (232 aa)
LOC104210355Zinc finger matrin-type protein 2-like isoform X1. (202 aa)
LOC104213116Intron-binding protein aquarius isoform X1. (1537 aa)
LOC104210440SURP and G-patch domain-containing protein 1-like protein. (435 aa)
LOC104213599Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
LOC104212114Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
LOC104211157DEAD-box ATP-dependent RNA helicase 24 isoform X1; Belongs to the DEAD box helicase family. (762 aa)
LOC104212655Uncharacterized protein LOC104212655. (919 aa)
LOC104212107Probable small nuclear ribonucleoprotein F. (88 aa)
LOC104212161U-box domain-containing protein 72-like isoform X1. (523 aa)
LOC104213475Uncharacterized protein LOC104213475. (686 aa)
LOC104215619Uncharacterized protein LOC104215619 isoform X1. (178 aa)
LOC104215818WD repeat-containing protein 70. (648 aa)
LOC104213344FHA domain-containing protein At4g14490-like. (541 aa)
LOC104211195Microfibrillar-associated protein 1-like. (430 aa)
LOC104211293U5 small nuclear ribonucleoprotein 200 kDa helicase-like. (1206 aa)
LOC104213602pre-mRNA-splicing factor 38-like. (400 aa)
LOC104215047Protein pleiotropic regulatory locus 1-like. (483 aa)
LOC104211380Uncharacterized protein LOC104211380. (278 aa)
LOC104211804pre-mRNA-processing-splicing factor 8-like. (2384 aa)
LOC104214530Survival of motor neuron-related-splicing factor 30 isoform X1. (300 aa)
LOC104215804Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (133 aa)
LOC104215265Probable small nuclear ribonucleoprotein F. (87 aa)
LOC104213073BUD13 homolog. (544 aa)
LOC104212724Putative glycine-rich cell wall structural protein 1. (162 aa)
LOC104216742LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC22 homolog. (899 aa)
LOC104216793Zinc finger CCCH domain-containing protein 1-like isoform X1. (263 aa)
LOC104218290Splicing factor U2AF-associated protein 2. (494 aa)
LOC104218832Peptidyl-prolyl cis-trans isomerase CYP57 isoform X1. (495 aa)
LOC104217940Uncharacterized protein LOC104217940 isoform X1. (689 aa)
LOC104219356Spliceosome-associated protein 49 isoform X1. (206 aa)
LOC104215168U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (196 aa)
LOC104215049Uncharacterized protein LOC104215049. (457 aa)
LOC104217821Splicing factor 3B subunit 6-like protein. (124 aa)
LOC104215779Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
LOC104220904Suppressor of mec-8 and unc-52 protein homolog 1-like. (514 aa)
LOC104216693DEAD-box ATP-dependent RNA helicase 5; Belongs to the DEAD box helicase family. (530 aa)
LOC104219231Branchpoint-bridging protein-like. (838 aa)
LOC104220893Serine/arginine repetitive matrix protein 2. (784 aa)
LOC104217877WW domain-binding protein 11-like. (524 aa)
LOC104221308U1 small nuclear ribonucleoprotein A. (255 aa)
LOC104221311Probable splicing factor 3A subunit 1. (808 aa)
LOC104217996pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1285 aa)
LOC104220179Peptidyl-prolyl cis-trans isomerase E. (173 aa)
LOC104221500Small nuclear ribonucleoprotein G. (80 aa)
LOC104220532Uncharacterized membrane protein At1g16860. (429 aa)
LOC104221183pre-mRNA-splicing factor SLU7-like. (536 aa)
LOC104222652U2 small nuclear ribonucleoprotein B''-like. (131 aa)
LOC104222878U4/U6 small nuclear ribonucleoprotein Prp31-like. (259 aa)
LOC104223505Uncharacterized protein LOC104223505. (270 aa)
LOC104222369Glycine-rich cell wall structural protein 2-like. (142 aa)
LOC104222729Calcium-binding protein P-like. (311 aa)
LOC104221271Serine/threonine-protein kinase prpf4B isoform X1. (1044 aa)
LOC104224708Probable pre-mRNA-splicing factor ATP-dependent RNA helicase. (722 aa)
LOC104224912RNA-binding protein 39. (582 aa)
LOC104221588Probable pre-mRNA-splicing factor ATP-dependent RNA helicase. (1214 aa)
LOC104224351pre-mRNA-processing protein 40C-like isoform X1. (741 aa)
LOC104222971Small nuclear ribonucleoprotein-associated protein. (276 aa)
LOC104227436RNA-binding protein 25 isoform X1. (934 aa)
LOC104225235Coiled-coil domain-containing protein 94 homolog. (328 aa)
LOC104225464SNW/SKI-interacting protein-like. (597 aa)
LOC104225591PHD finger-like domain-containing protein 5B. (110 aa)
LOC104225737pre-mRNA-processing factor 19 homolog 1-like. (521 aa)
LOC104223607pre-mRNA-splicing factor 18. (413 aa)
LOC104224009Activating signal cointegrator 1 complex subunit 3. (1175 aa)
LOC104224074Splicing factor 3B subunit 1. (1258 aa)
LOC104227912G patch domain-containing protein 11-like. (51 aa)
LOC104226961pre-mRNA-processing-splicing factor 8-like. (2395 aa)
LOC104228513Thioredoxin-like protein YLS8. (142 aa)
LOC104225855SNW/SKI-interacting protein-like. (592 aa)
LOC104230287pre-mRNA-splicing factor prp12. (1392 aa)
LOC104230335Beta-catenin-like protein 1 isoform X1. (533 aa)
LOC104226108Putative nuclear matrix constituent protein 1-like protein. (938 aa)
LOC104228474LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC22 homolog. (542 aa)
LOC104227356pre-mRNA-splicing factor 38. (382 aa)
LOC104227429Zinc finger CCCH domain-containing protein 25-like. (338 aa)
LOC104230192Ubiquitin-like protein 5. (73 aa)
LOC104230418Protein CWC15 homolog. (224 aa)
LOC104228336U1 small nuclear ribonucleoprotein 70 kDa. (473 aa)
LOC104231095pre-mRNA-splicing factor CWC25 homolog. (385 aa)
LOC104229100Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
LOC104229462Splicing factor 3B subunit 2. (587 aa)
LOC104229622Uncharacterized protein LOC104229622. (716 aa)
LOC104233282U2 small nuclear ribonucleoprotein B'. (238 aa)
LOC104232379Uncharacterized membrane protein At1g16860-like. (433 aa)
LOC104233420Coiled-coil domain-containing protein 94 homolog. (137 aa)
LOC104235155CD2 antigen cytoplasmic tail-binding protein 2. (390 aa)
LOC104231017Putative U5 small nuclear ribonucleoprotein 200 kDa helicase. (1253 aa)
LOC104233749U4/U6 small nuclear ribonucleoprotein Prp31 isoform X2. (483 aa)
LOC104231627U4/U6.U5 tri-snRNP-associated protein 1. (873 aa)
LOC104234365Coiled-coil domain-containing protein 94 homolog. (330 aa)
LOC104236946Zinc finger CCCH domain-containing protein 49-like. (477 aa)
LOC104233325Suppressor of mec-8 and unc-52 protein homolog 2 isoform X1. (558 aa)
LOC104236701Crooked neck-like protein 1. (693 aa)
LOC104235836U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (199 aa)
LOC104233160U4/U6 small nuclear ribonucleoprotein PRP4-like protein. (576 aa)
LOC104233208WD repeat-containing protein 25. (437 aa)
LOC104238093Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (190 aa)
LOC104233661Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
LOC104238709pre-mRNA-splicing factor SPF27 homolog. (250 aa)
LOC104238938Protein BUD31 homolog 2. (145 aa)
LOC104238040SNW/SKI-interacting protein-like. (235 aa)
LOC104234644pre-mRNA-splicing factor ISY1 homolog. (314 aa)
LOC104237445Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
LOC104235264U5 small nuclear ribonucleoprotein 200 kDa helicase-like. (2181 aa)
LOC104235333Nuclear cap-binding protein subunit 2-like. (106 aa)
LOC104238239U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1. (463 aa)
LOC104236065DEAD-box ATP-dependent RNA helicase 22. (550 aa)
LOC104236418U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (354 aa)
LOC104240818U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein. (217 aa)
LOC104240180Protein MOS2. (480 aa)
LOC104236941Serine/arginine repetitive matrix protein 1. (873 aa)
LOC104241234Probable inactive poly [ADP-ribose] polymerase SRO2. (139 aa)
LOC104240265Uncharacterized protein LOC104240265. (338 aa)
LOC104241392Coiled-coil domain-containing protein 94 homolog. (80 aa)
LOC104240642Suppressor of mec-8 and unc-52 protein homolog 1 isoform X1. (515 aa)
LOC104237457pre-mRNA-processing factor 17 isoform X1. (587 aa)
LOC104237284U5 small nuclear ribonucleoprotein 40 kDa protein. (340 aa)
LOC104242149Small nuclear ribonucleoprotein G. (80 aa)
LOC104240106Splicing factor 3A subunit 2. (347 aa)
LOC104237734U2 snRNP-associated SURP motif-containing protein-like isoform X1. (947 aa)
LOC104240542pre-mRNA-processing protein 40C-like. (318 aa)
LOC104241064Calcium homeostasis endoplasmic reticulum protein-like isoform X1. (681 aa)
LOC104238888DEAD-box ATP-dependent RNA helicase 42. (1142 aa)
LOC104239324U2 small nuclear ribonucleoprotein A. (288 aa)
LOC104243879Protein STABILIZED1-like isoform X1. (1024 aa)
LOC104242211116 kDa U5 small nuclear ribonucleoprotein component-like. (987 aa)
LOC104243777Splicing factor 3B subunit 3-like. (1211 aa)
LOC104240046Uncharacterized protein LOC104240046. (397 aa)
LOC104243966Thioredoxin-like protein YLS8 isoform X1. (164 aa)
LOC104240807LOW QUALITY PROTEIN: protein STABILIZED1-like. (974 aa)
LOC104240472U2 small nuclear ribonucleoprotein B''-like. (241 aa)
LOC104244661Adhesive plaque matrix protein-like. (289 aa)
LOC104245596Zinc finger matrin-type protein 2-like. (202 aa)
LOC104241590Zinc finger CCCH domain-containing protein 1. (342 aa)
LOC104241859Protein pleiotropic regulatory locus 1-like. (95 aa)
LOC104246038Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1. (1051 aa)
LOC104244216Splicing factor 3A subunit 2-like. (341 aa)
LOC104241629SNW/SKI-interacting protein-like. (100 aa)
LOC104246186U4/U6 small nuclear ribonucleoprotein Prp3. (854 aa)
LOC104244641pre-mRNA-splicing factor 18-like. (391 aa)
LOC104245935FHA domain-containing protein DDL isoform X1. (528 aa)
LOC104247135WW domain-binding protein 4. (262 aa)
LOC104245365DNA-damage-repair/toleration protein DRT111, chloroplastic. (388 aa)
LOC104246606Peptidyl-prolyl cis-trans isomerase CYP71. (627 aa)
LOC104245829Thioredoxin-like protein 4B isoform X1. (166 aa)
LOC104243595Splicing factor 3B subunit 4. (361 aa)
LOC104247960Protein gamma response 1 isoform X1. (697 aa)
LOC104243810DEAD-box ATP-dependent RNA helicase 21; Belongs to the DEAD box helicase family. (711 aa)
LOC104248234Calcium homeostasis endoplasmic reticulum protein-like. (673 aa)
LOC104244587Cell division cycle 5-like protein. (1028 aa)
LOC104247854Putative U5 small nuclear ribonucleoprotein 200 kDa helicase. (143 aa)
LOC104244662U4/U6.U5 tri-snRNP-associated protein 1-like. (229 aa)
LOC104244737Protein BUD31 homolog 1-like. (145 aa)
LOC104247417Small nuclear ribonucleoprotein Sm D2. (108 aa)
LOC104249900Peptidyl-prolyl cis-trans isomerase CYP65. (595 aa)
LOC104248341pre-mRNA-splicing factor SYF1. (914 aa)
LOC104245842Uncharacterized protein LOC104245842. (523 aa)
LOC104249661WD repeat-containing protein 53. (373 aa)
LOC104248966pre-mRNA-splicing factor syf2. (310 aa)
LOC104249922CWF19-like protein 2. (776 aa)
LOC104249209Uncharacterized protein LOC104249209. (650 aa)
LOC104249448Uncharacterized protein LOC104249448 isoform X1. (581 aa)
LOC104247371Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
LOC104247777U4/U6.U5 tri-snRNP-associated protein 2-like. (563 aa)
LOC104247895U2 snRNP-associated SURP motif-containing protein-like isoform X1. (962 aa)
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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