STRINGSTRING
LOC104210042 LOC104210042 LOC104210355 LOC104210355 LOC104213599 LOC104213599 LOC104212114 LOC104212114 LOC104211157 LOC104211157 LOC104212655 LOC104212655 LOC104212107 LOC104212107 LOC104215619 LOC104215619 LOC104211195 LOC104211195 LOC104211293 LOC104211293 LOC104213602 LOC104213602 LOC104211804 LOC104211804 LOC104215804 LOC104215804 LOC104215265 LOC104215265 LOC104219356 LOC104219356 LOC104215168 LOC104215168 LOC104215049 LOC104215049 LOC104217821 LOC104217821 LOC104215779 LOC104215779 LOC104220904 LOC104220904 LOC104217877 LOC104217877 LOC104221308 LOC104221308 LOC104221311 LOC104221311 LOC104221500 LOC104221500 LOC104220532 LOC104220532 LOC104222652 LOC104222652 LOC104222878 LOC104222878 LOC104223505 LOC104223505 LOC104222971 LOC104222971 LOC104225591 LOC104225591 LOC104224009 LOC104224009 LOC104224074 LOC104224074 LOC104226961 LOC104226961 LOC104228513 LOC104228513 LOC104230287 LOC104230287 LOC104226108 LOC104226108 LOC104227356 LOC104227356 LOC104230192 LOC104230192 LOC104228336 LOC104228336 LOC104229100 LOC104229100 LOC104229462 LOC104229462 LOC104229622 LOC104229622 LOC104233282 LOC104233282 LOC104232379 LOC104232379 LOC104235155 LOC104235155 LOC104233749 LOC104233749 LOC104231627 LOC104231627 LOC104233325 LOC104233325 LOC104235836 LOC104235836 LOC104233160 LOC104233160 LOC104238093 LOC104238093 LOC104233661 LOC104233661 LOC104237445 LOC104237445 LOC104235264 LOC104235264 LOC104235333 LOC104235333 LOC104238239 LOC104238239 LOC104236065 LOC104236065 LOC104236418 LOC104236418 LOC104240818 LOC104240818 LOC104240642 LOC104240642 LOC104237284 LOC104237284 LOC104242149 LOC104242149 LOC104240106 LOC104240106 LOC104241064 LOC104241064 LOC104238888 LOC104238888 LOC104239324 LOC104239324 LOC104243879 LOC104243879 LOC104242211 LOC104242211 LOC104243777 LOC104243777 LOC104243966 LOC104243966 LOC104240807 LOC104240807 LOC104240472 LOC104240472 LOC104245596 LOC104245596 LOC104244216 LOC104244216 LOC104246186 LOC104246186 LOC104247135 LOC104247135 LOC104245829 LOC104245829 LOC104243595 LOC104243595 LOC104243810 LOC104243810 LOC104248234 LOC104248234 LOC104247854 LOC104247854 LOC104244662 LOC104244662 LOC104247417 LOC104247417 LOC104249661 LOC104249661 LOC104249209 LOC104249209 LOC104249448 LOC104249448 LOC104247777 LOC104247777
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC104210042Splicing factor 3A subunit 3. (510 aa)
LOC104210355Zinc finger matrin-type protein 2-like isoform X1. (202 aa)
LOC104213599Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
LOC104212114Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
LOC104211157DEAD-box ATP-dependent RNA helicase 24 isoform X1; Belongs to the DEAD box helicase family. (762 aa)
LOC104212655Uncharacterized protein LOC104212655. (919 aa)
LOC104212107Probable small nuclear ribonucleoprotein F. (88 aa)
LOC104215619Uncharacterized protein LOC104215619 isoform X1. (178 aa)
LOC104211195Microfibrillar-associated protein 1-like. (430 aa)
LOC104211293U5 small nuclear ribonucleoprotein 200 kDa helicase-like. (1206 aa)
LOC104213602pre-mRNA-splicing factor 38-like. (400 aa)
LOC104211804pre-mRNA-processing-splicing factor 8-like. (2384 aa)
LOC104215804Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (133 aa)
LOC104215265Probable small nuclear ribonucleoprotein F. (87 aa)
LOC104219356Spliceosome-associated protein 49 isoform X1. (206 aa)
LOC104215168U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (196 aa)
LOC104215049Uncharacterized protein LOC104215049. (457 aa)
LOC104217821Splicing factor 3B subunit 6-like protein. (124 aa)
LOC104215779Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
LOC104220904Suppressor of mec-8 and unc-52 protein homolog 1-like. (514 aa)
LOC104217877WW domain-binding protein 11-like. (524 aa)
LOC104221308U1 small nuclear ribonucleoprotein A. (255 aa)
LOC104221311Probable splicing factor 3A subunit 1. (808 aa)
LOC104221500Small nuclear ribonucleoprotein G. (80 aa)
LOC104220532Uncharacterized membrane protein At1g16860. (429 aa)
LOC104222652U2 small nuclear ribonucleoprotein B''-like. (131 aa)
LOC104222878U4/U6 small nuclear ribonucleoprotein Prp31-like. (259 aa)
LOC104223505Uncharacterized protein LOC104223505. (270 aa)
LOC104222971Small nuclear ribonucleoprotein-associated protein. (276 aa)
LOC104225591PHD finger-like domain-containing protein 5B. (110 aa)
LOC104224009Activating signal cointegrator 1 complex subunit 3. (1175 aa)
LOC104224074Splicing factor 3B subunit 1. (1258 aa)
LOC104226961pre-mRNA-processing-splicing factor 8-like. (2395 aa)
LOC104228513Thioredoxin-like protein YLS8. (142 aa)
LOC104230287pre-mRNA-splicing factor prp12. (1392 aa)
LOC104226108Putative nuclear matrix constituent protein 1-like protein. (938 aa)
LOC104227356pre-mRNA-splicing factor 38. (382 aa)
LOC104230192Ubiquitin-like protein 5. (73 aa)
LOC104228336U1 small nuclear ribonucleoprotein 70 kDa. (473 aa)
LOC104229100Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
LOC104229462Splicing factor 3B subunit 2. (587 aa)
LOC104229622Uncharacterized protein LOC104229622. (716 aa)
LOC104233282U2 small nuclear ribonucleoprotein B'. (238 aa)
LOC104232379Uncharacterized membrane protein At1g16860-like. (433 aa)
LOC104235155CD2 antigen cytoplasmic tail-binding protein 2. (390 aa)
LOC104233749U4/U6 small nuclear ribonucleoprotein Prp31 isoform X2. (483 aa)
LOC104231627U4/U6.U5 tri-snRNP-associated protein 1. (873 aa)
LOC104233325Suppressor of mec-8 and unc-52 protein homolog 2 isoform X1. (558 aa)
LOC104235836U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (199 aa)
LOC104233160U4/U6 small nuclear ribonucleoprotein PRP4-like protein. (576 aa)
LOC104238093Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (190 aa)
LOC104233661Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
LOC104237445Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
LOC104235264U5 small nuclear ribonucleoprotein 200 kDa helicase-like. (2181 aa)
LOC104235333Nuclear cap-binding protein subunit 2-like. (106 aa)
LOC104238239U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1. (463 aa)
LOC104236065DEAD-box ATP-dependent RNA helicase 22. (550 aa)
LOC104236418U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (354 aa)
LOC104240818U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein. (217 aa)
LOC104240642Suppressor of mec-8 and unc-52 protein homolog 1 isoform X1. (515 aa)
LOC104237284U5 small nuclear ribonucleoprotein 40 kDa protein. (340 aa)
LOC104242149Small nuclear ribonucleoprotein G. (80 aa)
LOC104240106Splicing factor 3A subunit 2. (347 aa)
LOC104241064Calcium homeostasis endoplasmic reticulum protein-like isoform X1. (681 aa)
LOC104238888DEAD-box ATP-dependent RNA helicase 42. (1142 aa)
LOC104239324U2 small nuclear ribonucleoprotein A. (288 aa)
LOC104243879Protein STABILIZED1-like isoform X1. (1024 aa)
LOC104242211116 kDa U5 small nuclear ribonucleoprotein component-like. (987 aa)
LOC104243777Splicing factor 3B subunit 3-like. (1211 aa)
LOC104243966Thioredoxin-like protein YLS8 isoform X1. (164 aa)
LOC104240807LOW QUALITY PROTEIN: protein STABILIZED1-like. (974 aa)
LOC104240472U2 small nuclear ribonucleoprotein B''-like. (241 aa)
LOC104245596Zinc finger matrin-type protein 2-like. (202 aa)
LOC104244216Splicing factor 3A subunit 2-like. (341 aa)
LOC104246186U4/U6 small nuclear ribonucleoprotein Prp3. (854 aa)
LOC104247135WW domain-binding protein 4. (262 aa)
LOC104245829Thioredoxin-like protein 4B isoform X1. (166 aa)
LOC104243595Splicing factor 3B subunit 4. (361 aa)
LOC104243810DEAD-box ATP-dependent RNA helicase 21; Belongs to the DEAD box helicase family. (711 aa)
LOC104248234Calcium homeostasis endoplasmic reticulum protein-like. (673 aa)
LOC104247854Putative U5 small nuclear ribonucleoprotein 200 kDa helicase. (143 aa)
LOC104244662U4/U6.U5 tri-snRNP-associated protein 1-like. (229 aa)
LOC104247417Small nuclear ribonucleoprotein Sm D2. (108 aa)
LOC104249661WD repeat-containing protein 53. (373 aa)
LOC104249209Uncharacterized protein LOC104249209. (650 aa)
LOC104249448Uncharacterized protein LOC104249448 isoform X1. (581 aa)
LOC104247777U4/U6.U5 tri-snRNP-associated protein 2-like. (563 aa)
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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