(5 nodes) BRCA1-A complex network (Nicotiana sylvestris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC104210381	BRCA1-A complex subunit BRE. (378 aa)
	LOC104211770	PAX-interacting protein 1-like. (157 aa)
	LOC104229335	Uncharacterized protein LOC104229335. (248 aa)
	LOC104243764	Uncharacterized protein LOC104243764. (421 aa)
	LOC104248267	Uncharacterized protein LOC104248267. (189 aa)

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104210381	LOC104229335	A0A1U7UN34	A0A1U7X063	BRCA1-A complex subunit BRE.	Uncharacterized protein LOC104229335.	0.918
LOC104210381	LOC104248267	A0A1U7UN34	A0A1U7YVK3	BRCA1-A complex subunit BRE.	Uncharacterized protein LOC104248267.	0.918
LOC104211770	LOC104229335	A0A1U7UYE2	A0A1U7X063	PAX-interacting protein 1-like.	Uncharacterized protein LOC104229335.	0.471
LOC104211770	LOC104248267	A0A1U7UYE2	A0A1U7YVK3	PAX-interacting protein 1-like.	Uncharacterized protein LOC104248267.	0.471
LOC104229335	LOC104210381	A0A1U7X063	A0A1U7UN34	Uncharacterized protein LOC104229335.	BRCA1-A complex subunit BRE.	0.918
LOC104229335	LOC104211770	A0A1U7X063	A0A1U7UYE2	Uncharacterized protein LOC104229335.	PAX-interacting protein 1-like.	0.471
LOC104229335	LOC104243764	A0A1U7X063	A0A1U7Y5S4	Uncharacterized protein LOC104229335.	Uncharacterized protein LOC104243764.	0.991
LOC104229335	LOC104248267	A0A1U7X063	A0A1U7YVK3	Uncharacterized protein LOC104229335.	Uncharacterized protein LOC104248267.	0.901
LOC104243764	LOC104229335	A0A1U7Y5S4	A0A1U7X063	Uncharacterized protein LOC104243764.	Uncharacterized protein LOC104229335.	0.991
LOC104243764	LOC104248267	A0A1U7Y5S4	A0A1U7YVK3	Uncharacterized protein LOC104243764.	Uncharacterized protein LOC104248267.	0.991
LOC104248267	LOC104210381	A0A1U7YVK3	A0A1U7UN34	Uncharacterized protein LOC104248267.	BRCA1-A complex subunit BRE.	0.918
LOC104248267	LOC104211770	A0A1U7YVK3	A0A1U7UYE2	Uncharacterized protein LOC104248267.	PAX-interacting protein 1-like.	0.471
LOC104248267	LOC104229335	A0A1U7YVK3	A0A1U7X063	Uncharacterized protein LOC104248267.	Uncharacterized protein LOC104229335.	0.901
LOC104248267	LOC104243764	A0A1U7YVK3	A0A1U7Y5S4	Uncharacterized protein LOC104248267.	Uncharacterized protein LOC104243764.	0.991