(39 nodes) Chlorophyll biosynthetic process network (Nicotiana sylvestris)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	LOC104250169	Chlorophyllide a oxygenase, chloroplastic-like. (534 aa)
	LOC104249910	Isopentenyl-diphosphate Delta-isomerase I. (259 aa)
	LOC104250023	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family. (426 aa)
	LOC104248042	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family. (758 aa)
	LOC104211321	Uncharacterized protein LOC104211321. (320 aa)
	LOC104215588	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (558 aa)
	LOC104211781	Uncharacterized protein LOC104211781. (313 aa)
	LOC104215321	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic. (416 aa)
	LOC104214712	Chlorophyll synthase, chloroplastic. (373 aa)
	LOC104216147	Uncharacterized protein LOC104216147. (434 aa)
	LOC104220900	Uroporphyrinogen decarboxylase 1, chloroplastic. (337 aa)
	LOC104218083	Uncharacterized protein LOC104218083. (214 aa)
	LOC104220438	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (391 aa)
	LOC104218424	Porphobilinogen deaminase, chloroplastic-like. (370 aa)
	LOC104223219	Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family. (558 aa)
	LOC104224528	Chlorophyllide a oxygenase, chloroplastic-like. (531 aa)
	LOC104227957	Geranylgeranyl diphosphate reductase, chloroplastic. (464 aa)
	LOC104223503	Magnesium protoporphyrin IX methyltransferase, chloroplastic. (325 aa)
	LOC104226722	Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (303 aa)
	LOC104227011	Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic. (404 aa)
	LOC104224690	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily. (397 aa)
	LOC104225045	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (393 aa)
	LOC104225102	Protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like isoform X1. (283 aa)
	LOC104228313	Geranylgeranyl diphosphate reductase, chloroplastic-like. (453 aa)
	LOC104230492	Protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like. (287 aa)
	LOC104230483	Tetrapyrrole-binding protein, chloroplastic. (182 aa)
	LOC104235927	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (430 aa)
	LOC104235529	Uncharacterized protein ycf54-like. (169 aa)
	LOC104237424	Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (478 aa)
	LOC104241603	glutamyl-tRNA reductase 1, chloroplastic. (239 aa)
	LOC104240442	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily. (402 aa)
	LOC104238542	Isopentenyl-diphosphate Delta-isomerase I. (235 aa)
	LOC104239258	Porphobilinogen deaminase, chloroplastic-like. (365 aa)
	LOC104240347	Magnesium-chelatase subunit ChlH, chloroplastic. (1382 aa)
	LOC104240653	Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic. (397 aa)
	LOC104240771	Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic. (717 aa)
	LOC104241411	glutamyl-tRNA reductase 1, chloroplastic-like. (217 aa)
	LOC104246170	Isopentenyl-diphosphate Delta-isomerase I-like. (112 aa)
	LOC104243880	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily. (399 aa)

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104211321	LOC104223219	A0A1U7UWW7	A0A1U7W2R8	Uncharacterized protein LOC104211321.	Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family.	0.852
LOC104211321	LOC104225102	A0A1U7UWW7	A0A1U7WLM6	Uncharacterized protein LOC104211321.	Protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like isoform X1.	0.778
LOC104211321	LOC104230483	A0A1U7UWW7	A0A1U7X411	Uncharacterized protein LOC104211321.	Tetrapyrrole-binding protein, chloroplastic.	0.495
LOC104211321	LOC104230492	A0A1U7UWW7	A0A1U7WSQ3	Uncharacterized protein LOC104211321.	Protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like.	0.778
LOC104211321	LOC104241411	A0A1U7UWW7	A0A1U7Y5Y2	Uncharacterized protein LOC104211321.	glutamyl-tRNA reductase 1, chloroplastic-like.	0.911
LOC104211321	LOC104241603	A0A1U7UWW7	A0A1U7XV67	Uncharacterized protein LOC104211321.	glutamyl-tRNA reductase 1, chloroplastic.	0.911
LOC104211781	LOC104216147	A0A1U7VBK3	A0A1U7VQ23	Uncharacterized protein LOC104211781.	Uncharacterized protein LOC104216147.	0.879
LOC104214712	LOC104215321	A0A1U7VK75	A0A1U7VEP6	Chlorophyll synthase, chloroplastic.	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic.	0.975
LOC104214712	LOC104215588	A0A1U7VK75	A0A1U7VBJ9	Chlorophyll synthase, chloroplastic.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.499
LOC104214712	LOC104218424	A0A1U7VK75	A0A1U7VYY0	Chlorophyll synthase, chloroplastic.	Porphobilinogen deaminase, chloroplastic-like.	0.585
LOC104214712	LOC104220438	A0A1U7VK75	A0A1U7VXC1	Chlorophyll synthase, chloroplastic.	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.	0.539
LOC104214712	LOC104220900	A0A1U7VK75	A0A1U7VUX0	Chlorophyll synthase, chloroplastic.	Uroporphyrinogen decarboxylase 1, chloroplastic.	0.543
LOC104214712	LOC104223219	A0A1U7VK75	A0A1U7W2R8	Chlorophyll synthase, chloroplastic.	Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family.	0.497
LOC104214712	LOC104223503	A0A1U7VK75	A0A1U7WG90	Chlorophyll synthase, chloroplastic.	Magnesium protoporphyrin IX methyltransferase, chloroplastic.	0.846
LOC104214712	LOC104224528	A0A1U7VK75	A0A1U7WBA6	Chlorophyll synthase, chloroplastic.	Chlorophyllide a oxygenase, chloroplastic-like.	0.948
LOC104214712	LOC104224690	A0A1U7VK75	A0A1U7WK94	Chlorophyll synthase, chloroplastic.	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily.	0.929
LOC104214712	LOC104225045	A0A1U7VK75	A0A1U7WKB1	Chlorophyll synthase, chloroplastic.	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.	0.539
LOC104214712	LOC104226722	A0A1U7VK75	A0A1U7WII0	Chlorophyll synthase, chloroplastic.	Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.	0.605
LOC104214712	LOC104227011	A0A1U7VK75	A0A1U7WJK0	Chlorophyll synthase, chloroplastic.	Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic.	0.765
LOC104214712	LOC104227957	A0A1U7VK75	A0A1U7WFA3	Chlorophyll synthase, chloroplastic.	Geranylgeranyl diphosphate reductase, chloroplastic.	0.980