31 items (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC104211927	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
	LOC104210355	Zinc finger matrin-type protein 2-like isoform X1. (202 aa)
	LOC104222878	U4/U6 small nuclear ribonucleoprotein Prp31-like. (259 aa)
	LOC104223231	Uncharacterized protein LOC104223231. (187 aa)
	LOC104222431	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	LOC104222971	Small nuclear ribonucleoprotein-associated protein. (276 aa)
	LOC104223607	pre-mRNA-splicing factor 18. (413 aa)
	LOC104228513	Thioredoxin-like protein YLS8. (142 aa)
	LOC104225646	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	LOC104226830	U6 snRNA-associated Sm-like protein LSm6. (91 aa)
	LOC104229100	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	LOC104232818	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (88 aa)
	LOC104233749	U4/U6 small nuclear ribonucleoprotein Prp31 isoform X2. (483 aa)
	LOC104231627	U4/U6.U5 tri-snRNP-associated protein 1. (873 aa)
	LOC104233160	U4/U6 small nuclear ribonucleoprotein PRP4-like protein. (576 aa)
	LOC104233661	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	LOC104238444	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	LOC104243879	Protein STABILIZED1-like isoform X1. (1024 aa)
	LOC104242211	116 kDa U5 small nuclear ribonucleoprotein component-like. (987 aa)
	LOC104243966	Thioredoxin-like protein YLS8 isoform X1. (164 aa)
	LOC104240807	LOW QUALITY PROTEIN: protein STABILIZED1-like. (974 aa)
	LOC104245596	Zinc finger matrin-type protein 2-like. (202 aa)
	LOC104246186	U4/U6 small nuclear ribonucleoprotein Prp3. (854 aa)
	LOC104244641	pre-mRNA-splicing factor 18-like. (391 aa)
	LOC104245865	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
	LOC104245829	Thioredoxin-like protein 4B isoform X1. (166 aa)
	LOC104246088	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	LOC104244210	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	LOC104244662	U4/U6.U5 tri-snRNP-associated protein 1-like. (229 aa)
	LOC104247417	Small nuclear ribonucleoprotein Sm D2. (108 aa)
	LOC104249209	Uncharacterized protein LOC104249209. (650 aa)

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104210355	LOC104211927	A0A1U7UTL4	A0A1U7UTI7	Zinc finger matrin-type protein 2-like isoform X1.	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	0.798
LOC104210355	LOC104222431	A0A1U7UTL4	A0A1U7WCM0	Zinc finger matrin-type protein 2-like isoform X1.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.668
LOC104210355	LOC104222878	A0A1U7UTL4	A0A1U7W1L0	Zinc finger matrin-type protein 2-like isoform X1.	U4/U6 small nuclear ribonucleoprotein Prp31-like.	0.812
LOC104210355	LOC104222971	A0A1U7UTL4	A0A1U7WD94	Zinc finger matrin-type protein 2-like isoform X1.	Small nuclear ribonucleoprotein-associated protein.	0.884
LOC104210355	LOC104223231	A0A1U7UTL4	A0A1U7W2U4	Zinc finger matrin-type protein 2-like isoform X1.	Uncharacterized protein LOC104223231.	0.668
LOC104210355	LOC104225646	A0A1U7UTL4	A0A1U7WMA2	Zinc finger matrin-type protein 2-like isoform X1.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.828
LOC104210355	LOC104226830	A0A1U7UTL4	A0A1U7WRA0	Zinc finger matrin-type protein 2-like isoform X1.	U6 snRNA-associated Sm-like protein LSm6.	0.898
LOC104210355	LOC104228513	A0A1U7UTL4	A0A1U7WL50	Zinc finger matrin-type protein 2-like isoform X1.	Thioredoxin-like protein YLS8.	0.845
LOC104210355	LOC104229100	A0A1U7UTL4	A0A1U7WZB6	Zinc finger matrin-type protein 2-like isoform X1.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.760
LOC104210355	LOC104231627	A0A1U7UTL4	A0A1U7X933	Zinc finger matrin-type protein 2-like isoform X1.	U4/U6.U5 tri-snRNP-associated protein 1.	0.883
LOC104210355	LOC104232818	A0A1U7UTL4	A0A1U7X0P4	Zinc finger matrin-type protein 2-like isoform X1.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.878
LOC104210355	LOC104233160	A0A1U7UTL4	A0A1U7XEB7	Zinc finger matrin-type protein 2-like isoform X1.	U4/U6 small nuclear ribonucleoprotein PRP4-like protein.	0.771
LOC104210355	LOC104233661	A0A1U7UTL4	A0A1U7XG06	Zinc finger matrin-type protein 2-like isoform X1.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.760
LOC104210355	LOC104233749	A0A1U7UTL4	A0A1U7X737	Zinc finger matrin-type protein 2-like isoform X1.	U4/U6 small nuclear ribonucleoprotein Prp31 isoform X2.	0.812
LOC104210355	LOC104238444	A0A1U7UTL4	A0A1U7XX52	Zinc finger matrin-type protein 2-like isoform X1.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.889
LOC104210355	LOC104240807	A0A1U7UTL4	A0A1U7Y424	Zinc finger matrin-type protein 2-like isoform X1.	LOW QUALITY PROTEIN: protein STABILIZED1-like.	0.921
LOC104210355	LOC104242211	A0A1U7UTL4	A0A1U7Y0V7	Zinc finger matrin-type protein 2-like isoform X1.	116 kDa U5 small nuclear ribonucleoprotein component-like.	0.898
LOC104210355	LOC104243879	A0A1U7UTL4	A0A1U7XZP6	Zinc finger matrin-type protein 2-like isoform X1.	Protein STABILIZED1-like isoform X1.	0.921
LOC104210355	LOC104243966	A0A1U7UTL4	A0A1U7Y345	Zinc finger matrin-type protein 2-like isoform X1.	Thioredoxin-like protein YLS8 isoform X1.	0.845
LOC104210355	LOC104244210	A0A1U7UTL4	A0A1U7YF68	Zinc finger matrin-type protein 2-like isoform X1.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.828