32 items (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC104211109	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (88 aa)
	LOC104216954	Protein IWS1 homolog. (515 aa)
	LOC104217271	pre-mRNA-processing protein 40A isoform X1. (1052 aa)
	LOC104217410	Cyclin-dependent kinase 12-like isoform X1. (1035 aa)
	LOC104222648	Regulation of nuclear pre-mRNA domain-containing protein 1B isoform X1. (515 aa)
	LOC104218895	Uncharacterized protein LOC104218895. (676 aa)
	LOC104219886	UV-stimulated scaffold protein A homolog. (674 aa)
	LOC104223754	RNA polymerase I-specific transcription initiation factor RRN3-like. (801 aa)
	LOC104225051	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (117 aa)
	LOC104226258	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (89 aa)
	LOC104221739	Regulation of nuclear pre-mRNA domain-containing protein 1B-like. (555 aa)
	LOC104221632	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog isoform X1. (664 aa)
	LOC104224351	pre-mRNA-processing protein 40C-like isoform X1. (741 aa)
	LOC104222385	Uncharacterized protein LOC104222385. (1980 aa)
	LOC104222521	Repressor of RNA polymerase III transcription. (224 aa)
	LOC104224113	Transcription factor IIIB 50 kDa subunit. (513 aa)
	LOC104226108	Putative nuclear matrix constituent protein 1-like protein. (938 aa)
	LOC104227165	RNA polymerase I-specific transcription initiation factor RRN3 isoform X1. (619 aa)
	LOC104227993	Uncharacterized protein LOC104227993 isoform X1. (535 aa)
	LOC104229282	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (96 aa)
	LOC104234834	RNA polymerase II-associated factor 1 homolog. (656 aa)
	LOC104236299	RNA polymerase-associated protein LEO1 isoform X1. (636 aa)
	LOC104238688	Parafibromin. (394 aa)
	LOC104239638	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (117 aa)
	LOC104240702	Uncharacterized protein LOC104240702. (982 aa)
	LOC104240542	pre-mRNA-processing protein 40C-like. (318 aa)
	LOC104243461	pre-mRNA-processing protein 40A-like. (837 aa)
	LOC104243595	Splicing factor 3B subunit 4. (361 aa)
	LOC104245613	RNA polymerase-associated protein RTF1 homolog. (654 aa)
	LOC104246392	RNA polymerase-associated protein CTR9 homolog. (1095 aa)
	LOC104249331	pre-mRNA-processing protein 40A-like. (263 aa)
	LOC104249079	Actin cytoskeleton-regulatory complex protein PAN1. (494 aa)

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104211109	LOC104216954	A0A1U7V9C2	A0A1U7VGB9	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Protein IWS1 homolog.	0.810
LOC104211109	LOC104222521	A0A1U7V9C2	A0A1U7WBL9	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Repressor of RNA polymerase III transcription.	0.581
LOC104211109	LOC104225051	A0A1U7V9C2	A0A1U7W905	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.747
LOC104211109	LOC104234834	A0A1U7V9C2	A0A1U7X7E9	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	RNA polymerase II-associated factor 1 homolog.	0.551
LOC104211109	LOC104236299	A0A1U7V9C2	A0A1U7XFS0	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	RNA polymerase-associated protein LEO1 isoform X1.	0.730
LOC104211109	LOC104238688	A0A1U7V9C2	A0A1U7XH93	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Parafibromin.	0.780
LOC104211109	LOC104239638	A0A1U7V9C2	A0A1U7XNZ3	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.747
LOC104211109	LOC104245613	A0A1U7V9C2	A0A1U7YJX7	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	RNA polymerase-associated protein RTF1 homolog.	0.704
LOC104211109	LOC104246392	A0A1U7V9C2	A0A1U7YMP3	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	RNA polymerase-associated protein CTR9 homolog.	0.591
LOC104216954	LOC104211109	A0A1U7VGB9	A0A1U7V9C2	Protein IWS1 homolog.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.810
LOC104216954	LOC104217410	A0A1U7VGB9	A0A1U7VU66	Protein IWS1 homolog.	Cyclin-dependent kinase 12-like isoform X1.	0.482
LOC104216954	LOC104221632	A0A1U7VGB9	A0A1U7W9W1	Protein IWS1 homolog.	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog isoform X1.	0.435
LOC104216954	LOC104225051	A0A1U7VGB9	A0A1U7W905	Protein IWS1 homolog.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.890
LOC104216954	LOC104226258	A0A1U7VGB9	A0A1U7W929	Protein IWS1 homolog.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.810
LOC104216954	LOC104229282	A0A1U7VGB9	A0A1U7WZZ7	Protein IWS1 homolog.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.810
LOC104216954	LOC104234834	A0A1U7VGB9	A0A1U7X7E9	Protein IWS1 homolog.	RNA polymerase II-associated factor 1 homolog.	0.757
LOC104216954	LOC104236299	A0A1U7VGB9	A0A1U7XFS0	Protein IWS1 homolog.	RNA polymerase-associated protein LEO1 isoform X1.	0.951
LOC104216954	LOC104238688	A0A1U7VGB9	A0A1U7XH93	Protein IWS1 homolog.	Parafibromin.	0.837
LOC104216954	LOC104239638	A0A1U7VGB9	A0A1U7XNZ3	Protein IWS1 homolog.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.890
LOC104216954	LOC104240702	A0A1U7VGB9	A0A1U7XPA7	Protein IWS1 homolog.	Uncharacterized protein LOC104240702.	0.482