29 items (Nicotiana sylvestris) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC104240642	Suppressor of mec-8 and unc-52 protein homolog 1 isoform X1. (515 aa)
	LOC104246088	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	LOC104244210	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	LOC104247417	Small nuclear ribonucleoprotein Sm D2. (108 aa)
	LOC104242149	Small nuclear ribonucleoprotein G. (80 aa)
	LOC104238444	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	LOC104245865	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
	LOC104211927	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
	LOC104213599	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
	LOC104212114	Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
	LOC104213602	pre-mRNA-splicing factor 38-like. (400 aa)
	LOC104211739	Formin-binding protein 4 isoform X1. (907 aa)
	LOC104215804	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (133 aa)
	LOC104217821	Splicing factor 3B subunit 6-like protein. (124 aa)
	LOC104247135	WW domain-binding protein 4. (262 aa)
	LOC104215779	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
	LOC104220904	Suppressor of mec-8 and unc-52 protein homolog 1-like. (514 aa)
	LOC104221500	Small nuclear ribonucleoprotein G. (80 aa)
	LOC104223231	Uncharacterized protein LOC104223231. (187 aa)
	LOC104224996	pre-mRNA-splicing factor 38B. (435 aa)
	LOC104222431	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	LOC104225591	PHD finger-like domain-containing protein 5B. (110 aa)
	LOC104225646	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	LOC104227356	pre-mRNA-splicing factor 38. (382 aa)
	LOC104227429	Zinc finger CCCH domain-containing protein 25-like. (338 aa)
	LOC104229100	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	LOC104229462	Splicing factor 3B subunit 2. (587 aa)
	LOC104233661	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	LOC104237445	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104211927	LOC104212114	A0A1U7UTI7	A0A1U7UZM1	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	Splicing factor subunit; Belongs to the SF3B5 family.	0.904
LOC104211927	LOC104213599	A0A1U7UTI7	A0A1U7UZJ7	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.930
LOC104211927	LOC104213602	A0A1U7UTI7	A0A1U7V8Y3	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	pre-mRNA-splicing factor 38-like.	0.590
LOC104211927	LOC104215779	A0A1U7UTI7	A0A1U7VQ16	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.936
LOC104211927	LOC104215804	A0A1U7UTI7	A0A1U7VCC2	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.930
LOC104211927	LOC104217821	A0A1U7UTI7	A0A1U7VNC5	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	Splicing factor 3B subunit 6-like protein.	0.608
LOC104211927	LOC104220904	A0A1U7UTI7	A0A1U7VQJ0	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	Suppressor of mec-8 and unc-52 protein homolog 1-like.	0.513
LOC104211927	LOC104221500	A0A1U7UTI7	A0A1U7VWV6	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	Small nuclear ribonucleoprotein G.	0.947
LOC104211927	LOC104222431	A0A1U7UTI7	A0A1U7WCM0	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.787
LOC104211927	LOC104223231	A0A1U7UTI7	A0A1U7W2U4	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	Uncharacterized protein LOC104223231.	0.787
LOC104211927	LOC104225591	A0A1U7UTI7	A0A1U7WEQ8	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	PHD finger-like domain-containing protein 5B.	0.924
LOC104211927	LOC104225646	A0A1U7UTI7	A0A1U7WMA2	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
LOC104211927	LOC104227356	A0A1U7UTI7	A0A1U7WT75	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	pre-mRNA-splicing factor 38.	0.590
LOC104211927	LOC104227429	A0A1U7UTI7	A0A1U7WUR2	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	Zinc finger CCCH domain-containing protein 25-like.	0.746
LOC104211927	LOC104229100	A0A1U7UTI7	A0A1U7WZB6	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.969
LOC104211927	LOC104229462	A0A1U7UTI7	A0A1U7X0L3	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	Splicing factor 3B subunit 2.	0.872
LOC104211927	LOC104233661	A0A1U7UTI7	A0A1U7XG06	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.969
LOC104211927	LOC104237445	A0A1U7UTI7	A0A1U7XJW1	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.936
LOC104211927	LOC104238444	A0A1U7UTI7	A0A1U7XX52	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
LOC104211927	LOC104240642	A0A1U7UTI7	A0A1U7XSA1	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	Suppressor of mec-8 and unc-52 protein homolog 1 isoform X1.	0.513