23 items (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC104242572	Zinc finger RNA-binding protein-like. (176 aa)
	LOC104210042	Splicing factor 3A subunit 3. (510 aa)
	LOC104210355	Zinc finger matrin-type protein 2-like isoform X1. (202 aa)
	LOC104211077	Uncharacterized protein LOC104211077 isoform X1. (524 aa)
	LOC104212981	Zinc finger CCCH domain-containing protein 3 isoform X1. (154 aa)
	LOC104214862	Mediator of RNA polymerase II transcription subunit 12-like. (634 aa)
	LOC104215168	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (196 aa)
	LOC104223950	Uncharacterized protein LOC104223950 isoform X1. (696 aa)
	LOC104221933	Zinc finger protein 593. (120 aa)
	LOC104232203	Uncharacterized protein LOC104232203. (489 aa)
	LOC104233718	UBP1-associated proteins 1C. (313 aa)
	LOC104230653	HVA22-like protein. (301 aa)
	LOC104235906	dnaJ homolog subfamily C member 21. (626 aa)
	LOC104235836	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (199 aa)
	LOC104239465	Myosin-11-like isoform X1. (487 aa)
	LOC104241059	Uncharacterized protein LOC104241059 isoform X1. (549 aa)
	LOC104240106	Splicing factor 3A subunit 2. (347 aa)
	LOC104241123	Zinc finger protein 385B-like. (382 aa)
	LOC104240274	Uncharacterized protein LOC104240274 isoform X1. (498 aa)
	LOC104245596	Zinc finger matrin-type protein 2-like. (202 aa)
	LOC104244216	Splicing factor 3A subunit 2-like. (341 aa)
	LOC104247135	WW domain-binding protein 4. (262 aa)
	LOC104246368	Zinc finger protein 622-like. (415 aa)

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104210042	LOC104210355	A0A1U7USF1	A0A1U7UTL4	Splicing factor 3A subunit 3.	Zinc finger matrin-type protein 2-like isoform X1.	0.861
LOC104210042	LOC104215168	A0A1U7USF1	A0A1U7VLK1	Splicing factor 3A subunit 3.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.942
LOC104210042	LOC104235836	A0A1U7USF1	A0A1U7XE89	Splicing factor 3A subunit 3.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.942
LOC104210042	LOC104240106	A0A1U7USF1	A0A1U7XU60	Splicing factor 3A subunit 3.	Splicing factor 3A subunit 2.	0.998
LOC104210042	LOC104244216	A0A1U7USF1	A0A1U7Y7H9	Splicing factor 3A subunit 3.	Splicing factor 3A subunit 2-like.	0.998
LOC104210042	LOC104245596	A0A1U7USF1	A0A1U7Y5X2	Splicing factor 3A subunit 3.	Zinc finger matrin-type protein 2-like.	0.861
LOC104210042	LOC104247135	A0A1U7USF1	A0A1U7YB91	Splicing factor 3A subunit 3.	WW domain-binding protein 4.	0.843
LOC104210355	LOC104210042	A0A1U7UTL4	A0A1U7USF1	Zinc finger matrin-type protein 2-like isoform X1.	Splicing factor 3A subunit 3.	0.861
LOC104210355	LOC104240106	A0A1U7UTL4	A0A1U7XU60	Zinc finger matrin-type protein 2-like isoform X1.	Splicing factor 3A subunit 2.	0.812
LOC104210355	LOC104244216	A0A1U7UTL4	A0A1U7Y7H9	Zinc finger matrin-type protein 2-like isoform X1.	Splicing factor 3A subunit 2-like.	0.812
LOC104210355	LOC104245596	A0A1U7UTL4	A0A1U7Y5X2	Zinc finger matrin-type protein 2-like isoform X1.	Zinc finger matrin-type protein 2-like.	0.900
LOC104210355	LOC104247135	A0A1U7UTL4	A0A1U7YB91	Zinc finger matrin-type protein 2-like isoform X1.	WW domain-binding protein 4.	0.888
LOC104214862	LOC104215168	A0A1U7V3U5	A0A1U7VLK1	Mediator of RNA polymerase II transcription subunit 12-like.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.424
LOC104214862	LOC104235836	A0A1U7V3U5	A0A1U7XE89	Mediator of RNA polymerase II transcription subunit 12-like.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.424
LOC104215168	LOC104210042	A0A1U7VLK1	A0A1U7USF1	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	Splicing factor 3A subunit 3.	0.942
LOC104215168	LOC104214862	A0A1U7VLK1	A0A1U7V3U5	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	Mediator of RNA polymerase II transcription subunit 12-like.	0.424
LOC104215168	LOC104235836	A0A1U7VLK1	A0A1U7XE89	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.905
LOC104215168	LOC104240106	A0A1U7VLK1	A0A1U7XU60	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	Splicing factor 3A subunit 2.	0.831
LOC104215168	LOC104244216	A0A1U7VLK1	A0A1U7Y7H9	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	Splicing factor 3A subunit 2-like.	0.831
LOC104221933	LOC104233718	A0A1U7W9R6	A0A1U7X3M1	Zinc finger protein 593.	UBP1-associated proteins 1C.	0.627