(5 nodes) PWI domain superfamily network (Nicotiana tabacum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107763094	RNA-binding protein 25-like isoform X1. (934 aa)
	LOC107763984	pre-mRNA-processing protein 40C-like. (108 aa)
	LOC107767286	RNA-binding protein 25-like isoform X1. (937 aa)
	LOC107787198	Serine/arginine repetitive matrix protein 1-like. (873 aa)
	LOC107818409	Serine/arginine repetitive matrix protein 1-like. (873 aa)

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107763094	LOC107763984	A0A1S3XAS5	A0A1S3XDX5	RNA-binding protein 25-like isoform X1.	pre-mRNA-processing protein 40C-like.	0.856
LOC107763094	LOC107767286	A0A1S3XAS5	A0A1S3XP28	RNA-binding protein 25-like isoform X1.	RNA-binding protein 25-like isoform X1.	0.900
LOC107763094	LOC107787198	A0A1S3XAS5	A0A1S3ZIP2	RNA-binding protein 25-like isoform X1.	Serine/arginine repetitive matrix protein 1-like.	0.983
LOC107763094	LOC107818409	A0A1S3XAS5	A0A1S4CFF1	RNA-binding protein 25-like isoform X1.	Serine/arginine repetitive matrix protein 1-like.	0.983
LOC107763984	LOC107763094	A0A1S3XDX5	A0A1S3XAS5	pre-mRNA-processing protein 40C-like.	RNA-binding protein 25-like isoform X1.	0.856
LOC107763984	LOC107767286	A0A1S3XDX5	A0A1S3XP28	pre-mRNA-processing protein 40C-like.	RNA-binding protein 25-like isoform X1.	0.856
LOC107763984	LOC107787198	A0A1S3XDX5	A0A1S3ZIP2	pre-mRNA-processing protein 40C-like.	Serine/arginine repetitive matrix protein 1-like.	0.913
LOC107763984	LOC107818409	A0A1S3XDX5	A0A1S4CFF1	pre-mRNA-processing protein 40C-like.	Serine/arginine repetitive matrix protein 1-like.	0.913
LOC107767286	LOC107763094	A0A1S3XP28	A0A1S3XAS5	RNA-binding protein 25-like isoform X1.	RNA-binding protein 25-like isoform X1.	0.900
LOC107767286	LOC107763984	A0A1S3XP28	A0A1S3XDX5	RNA-binding protein 25-like isoform X1.	pre-mRNA-processing protein 40C-like.	0.856
LOC107767286	LOC107787198	A0A1S3XP28	A0A1S3ZIP2	RNA-binding protein 25-like isoform X1.	Serine/arginine repetitive matrix protein 1-like.	0.983
LOC107767286	LOC107818409	A0A1S3XP28	A0A1S4CFF1	RNA-binding protein 25-like isoform X1.	Serine/arginine repetitive matrix protein 1-like.	0.983
LOC107787198	LOC107763094	A0A1S3ZIP2	A0A1S3XAS5	Serine/arginine repetitive matrix protein 1-like.	RNA-binding protein 25-like isoform X1.	0.983
LOC107787198	LOC107763984	A0A1S3ZIP2	A0A1S3XDX5	Serine/arginine repetitive matrix protein 1-like.	pre-mRNA-processing protein 40C-like.	0.913
LOC107787198	LOC107767286	A0A1S3ZIP2	A0A1S3XP28	Serine/arginine repetitive matrix protein 1-like.	RNA-binding protein 25-like isoform X1.	0.983
LOC107787198	LOC107818409	A0A1S3ZIP2	A0A1S4CFF1	Serine/arginine repetitive matrix protein 1-like.	Serine/arginine repetitive matrix protein 1-like.	0.900
LOC107818409	LOC107763094	A0A1S4CFF1	A0A1S3XAS5	Serine/arginine repetitive matrix protein 1-like.	RNA-binding protein 25-like isoform X1.	0.983
LOC107818409	LOC107763984	A0A1S4CFF1	A0A1S3XDX5	Serine/arginine repetitive matrix protein 1-like.	pre-mRNA-processing protein 40C-like.	0.913
LOC107818409	LOC107767286	A0A1S4CFF1	A0A1S3XP28	Serine/arginine repetitive matrix protein 1-like.	RNA-binding protein 25-like isoform X1.	0.983
LOC107818409	LOC107787198	A0A1S4CFF1	A0A1S3ZIP2	Serine/arginine repetitive matrix protein 1-like.	Serine/arginine repetitive matrix protein 1-like.	0.900