STRINGSTRING
LOC107759224 LOC107759224 LOC107759955 LOC107759955 LOC107760727 LOC107760727 LOC107760883 LOC107760883 LOC107760954 LOC107760954 LOC107761264 LOC107761264 LOC107761366 LOC107761366 LOC107761340 LOC107761340 LOC107761621 LOC107761621 LOC107761795 LOC107761795 LOC107761809 LOC107761809 LOC107762036 LOC107762036 LOC107762120 LOC107762120 LOC107762516 LOC107762516 LOC107763606 LOC107763606 LOC107763574 LOC107763574 LOC107763935 LOC107763935 LOC107764143 LOC107764143 LOC107764304 LOC107764304 LOC107764387 LOC107764387 LOC107764724 LOC107764724 LOC107765316 LOC107765316 LOC107765637 LOC107765637 LOC107765719 LOC107765719 LOC107767617 LOC107767617 LOC107768283 LOC107768283 LOC107768241 LOC107768241 LOC107768427 LOC107768427 LOC107768711 LOC107768711 LOC107768976 LOC107768976 LOC107769025 LOC107769025 LOC107769397 LOC107769397 LOC107769830 LOC107769830 LOC107769877 LOC107769877 LOC107770462 LOC107770462 LOC107770665 LOC107770665 LOC107770815 LOC107770815 LOC107771807 LOC107771807 LOC107772482 LOC107772482 LOC107774303 LOC107774303 LOC107774289 LOC107774289 LOC107774979 LOC107774979 LOC107775353 LOC107775353 LOC107775574 LOC107775574 LOC107775652 LOC107775652 LOC107776250 LOC107776250 LOC107776371 LOC107776371 LOC107777093 LOC107777093 LOC107777096 LOC107777096 LOC107777811 LOC107777811 LOC107777787 LOC107777787 LOC107778705 LOC107778705 LOC107778936 LOC107778936 LOC107779020 LOC107779020 LOC107779177 LOC107779177 LOC107779317 LOC107779317 LOC107779934 LOC107779934 LOC107780697 LOC107780697 LOC107781009 LOC107781009 LOC107781459 LOC107781459 LOC107781727 LOC107781727 LOC107782057 LOC107782057 LOC107782652 LOC107782652 LOC107782693 LOC107782693 LOC107783063 LOC107783063 LOC107783659 LOC107783659 LOC107784260 LOC107784260 LOC107785039 LOC107785039 LOC107785976 LOC107785976 LOC107786333 LOC107786333 LOC107786310 LOC107786310 LOC107786359 LOC107786359 LOC107786554 LOC107786554 LOC107787741 LOC107787741 LOC107788226 LOC107788226 LOC107788613 LOC107788613 LOC107788842 LOC107788842 LOC107788893 LOC107788893 LOC107789012 LOC107789012 LOC107789212 LOC107789212 LOC107790215 LOC107790215 LOC107790640 LOC107790640 LOC107790763 LOC107790763 LOC107791487 LOC107791487 LOC107791849 LOC107791849 LOC107791871 LOC107791871 LOC107791972 LOC107791972 LOC107792024 LOC107792024 LOC107792015 LOC107792015 LOC107793214 LOC107793214 LOC107793502 LOC107793502 LOC107793663 LOC107793663 LOC107793828 LOC107793828 LOC107793854 LOC107793854 LOC107794332 LOC107794332 LOC107794512 LOC107794512 LOC107794852 LOC107794852 LOC107795459 LOC107795459 LOC107795961 LOC107795961 LOC107795963 LOC107795963 LOC107796022 LOC107796022 LOC107796991 LOC107796991 LOC107797821 LOC107797821 LOC107798069 LOC107798069 LOC107798399 LOC107798399 LOC107799409 LOC107799409 LOC107799512 LOC107799512 LOC107800724 LOC107800724 LOC107800862 LOC107800862 LOC107801239 LOC107801239 LOC107801728 LOC107801728 LOC107801952 LOC107801952 LOC107802397 LOC107802397 LOC107804052 LOC107804052 LOC107804672 LOC107804672 LOC107807130 LOC107807130 LOC107807302 LOC107807302 LOC107807361 LOC107807361 LOC107807360 LOC107807360 LOC107808458 LOC107808458 LOC107808457 LOC107808457 LOC107808631 LOC107808631 LOC107808627 LOC107808627 LOC107808925 LOC107808925 LOC107810344 LOC107810344 LOC107810614 LOC107810614 LOC107810650 LOC107810650 LOC107811333 LOC107811333 LOC107811299 LOC107811299 LOC107811722 LOC107811722 LOC107813446 LOC107813446 LOC107815481 LOC107815481 LOC107815595 LOC107815595 LOC107816483 LOC107816483 LOC107816520 LOC107816520 LOC107817035 LOC107817035 LOC107817394 LOC107817394 LOC107817959 LOC107817959 LOC107818006 LOC107818006 LOC107817960 LOC107817960 LOC107818203 LOC107818203 LOC107818696 LOC107818696 LOC107820204 LOC107820204 LOC107820340 LOC107820340 LOC107820382 LOC107820382 LOC107820703 LOC107820703 LOC107821000 LOC107821000 LOC107821045 LOC107821045 LOC107821552 LOC107821552 LOC107821695 LOC107821695 LOC107822073 LOC107822073 LOC107822100 LOC107822100 LOC107823580 LOC107823580 LOC107823761 LOC107823761 LOC107824171 LOC107824171 LOC107825265 LOC107825265 LOC107825975 LOC107825975 LOC107826245 LOC107826245 LOC107826465 LOC107826465 LOC107826682 LOC107826682 LOC107826852 LOC107826852 LOC107827612 LOC107827612 LOC107827900 LOC107827900 LOC107828407 LOC107828407 LOC107828340 LOC107828340 LOC107829068 LOC107829068 LOC107829301 LOC107829301 LOC107829442 LOC107829442 LOC107829563 LOC107829563 LOC107830027 LOC107830027 LOC107830305 LOC107830305 LOC107830417 LOC107830417 LOC107831076 LOC107831076 LOC107831599 LOC107831599 LOC107832006 LOC107832006 LOC107832193 LOC107832193 LOC107832749 LOC107832749 NtFib1 NtFib1 NtRIO NtRIO MARBPF MARBPF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC107759224AATF-Che1 domain-containing protein. (246 aa)
LOC107759955RNA cytidine acetyltransferase 1-like. (146 aa)
LOC107760727rRNA biogenesis protein RRP5-like. (338 aa)
LOC107760883Probable U3 small nucleolar RNA-associated protein 11. (191 aa)
LOC107760954Nucleolar complex protein 4 homolog. (430 aa)
LOC107761264Nucleolar protein 14. (948 aa)
LOC107761366pre-rRNA-processing protein ESF2-like. (256 aa)
LOC107761340RNA cytidine acetyltransferase 1-like isoform X1. (301 aa)
LOC10776162130S ribosomal protein S1-like. (255 aa)
LOC107761795Protein SLOW WALKER 1-like. (533 aa)
LOC107761809Uncharacterized protein LOC107761809. (180 aa)
LOC107762036rRNA-processing protein fcf2-like. (97 aa)
LOC107762120rRNA-processing protein FCF1 homolog. (198 aa)
LOC107762516WD repeat-containing protein 75-like. (801 aa)
LOC107763606Nucleolar protein 56-like. (545 aa)
LOC10776357430S ribosomal protein S1-like. (521 aa)
LOC107763935pre-rRNA-processing protein TSR1 homolog. (213 aa)
LOC107764143WD repeat-containing protein 3-like isoform X1. (945 aa)
LOC107764304RRP12-like protein. (319 aa)
LOC107764387Uncharacterized protein LOC107764387. (283 aa)
LOC107764724U3 small nucleolar ribonucleoprotein protein MPP10-like. (119 aa)
LOC107765316Prostatic spermine-binding protein-like. (160 aa)
LOC107765637U3 small nucleolar RNA-associated protein 18 homolog. (553 aa)
LOC107765719DEAD-box ATP-dependent RNA helicase 42-like isoform X1. (340 aa)
LOC107767617Ribosomal RNA small subunit methyltransferase NEP1-like. (276 aa)
LOC107768283WD repeat-containing protein 3-like. (950 aa)
LOC107768241rRNA biogenesis protein RRP5. (1927 aa)
LOC107768427rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (356 aa)
LOC107768711U3 small nucleolar RNA-associated protein 4 homolog. (818 aa)
LOC10776897630S ribosomal protein S1 homolog A-like. (520 aa)
LOC107769025Suppressor of glycerol defect protein 1-like. (652 aa)
LOC107769397Ribosomal RNA small subunit methyltransferase NEP1-like isoform X1. (194 aa)
LOC107769830Periodic tryptophan protein 2 homolog. (896 aa)
LOC107769877LOW QUALITY PROTEIN: nucleolar protein 6-like. (1111 aa)
LOC107770462RRP12-like protein. (897 aa)
LOC107770665Uncharacterized protein LOC107770665. (358 aa)
LOC107770815LOW QUALITY PROTEIN: ATP-dependent RNA helicase DEAH13-like. (1307 aa)
LOC107771807pre-rRNA-processing protein ESF2-like. (256 aa)
LOC107772482U3 small nucleolar ribonucleoprotein protein IMP3-like. (182 aa)
LOC107774303Nucleolar protein 14-like. (218 aa)
LOC107774289Ribosomal RNA processing protein 36 homolog. (247 aa)
LOC107774979U3 small nucleolar RNA-associated protein 14 homolog A-like. (905 aa)
LOC107775353Brix domain-containing protein ZK795.3-like. (156 aa)
LOC107775574U3 small nucleolar ribonucleoprotein protein IMP4. (293 aa)
LOC107775652Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (572 aa)
LOC107776250Uncharacterized protein LOC107776250. (171 aa)
LOC107776371Neuroguidin-like. (317 aa)
LOC107777093Nucleolar protein 6. (1052 aa)
LOC107777096Ribosome biogenesis protein BMS1 homolog. (1013 aa)
LOC107777811Probable mediator of RNA polymerase II transcription subunit 36b. (311 aa)
LOC107777787rRNA biogenesis protein RRP5-like. (508 aa)
LOC107778705Phosphopantothenoylcysteine decarboxylase subunit VHS3-like. (159 aa)
LOC107778936Serine/threonine-protein kinase rio2-like. (455 aa)
LOC107779020Mediator of RNA polymerase II transcription subunit 36a-like. (314 aa)
LOC107779177Something about silencing protein 10-like isoform X1. (654 aa)
LOC107779317KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (396 aa)
LOC107779934pre-rRNA-processing protein ESF2-like. (256 aa)
LOC107780697U3 snoRNP-associated protein-like YAOH. (517 aa)
LOC107781009Ribosome biogenesis protein BMS1 homolog. (178 aa)
LOC107781459Probable 18S rRNA (Guanine-N(7))-methyltransferase. (290 aa)
LOC107781727RNA-binding protein NOB1-like. (640 aa)
LOC107782057Uncharacterized protein LOC107782057. (164 aa)
LOC107782652Uncharacterized protein LOC107782652 isoform X1. (626 aa)
LOC107782693DEAD-box ATP-dependent RNA helicase 10-like isoform X1. (104 aa)
LOC107783063Ribosomal RNA processing protein 36 homolog. (247 aa)
LOC107783659rRNA biogenesis protein RRP5-like. (559 aa)
LOC107784260rRNA-processing protein fcf2-like. (194 aa)
LOC107785039Transducin beta-like protein 3. (862 aa)
LOC107785976rRNA-processing protein fcf2-like. (194 aa)
LOC107786333Aberrant root formation protein 4-like isoform X1. (618 aa)
LOC107786310U3 small nucleolar ribonucleoprotein protein IMP4-like. (284 aa)
LOC107786359Probable 18S rRNA (Guanine-N(7))-methyltransferase. (290 aa)
LOC107786554ATP-dependent DNA helicase homolog RECG, chloroplastic-like isoform X1. (1001 aa)
LOC107787741Nucleolar protein 14-like. (745 aa)
LOC107788226Ribosome biogenesis protein BMS1 homolog. (1222 aa)
LOC107788613RNA helicase. (746 aa)
LOC107788842U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (229 aa)
LOC107788893Protein SLOW WALKER 1-like. (533 aa)
LOC107789012RRP12-like protein isoform X1. (1282 aa)
LOC107789212U3 small nucleolar RNA-associated protein 14-like. (300 aa)
LOC107790215DEAD-box ATP-dependent RNA helicase 42-like isoform X1. (334 aa)
LOC107790640DEAD-box ATP-dependent RNA helicase 36-like; Belongs to the DEAD box helicase family. (492 aa)
LOC107790763U3 small nucleolar RNA-associated protein 4 homolog. (817 aa)
LOC107791487KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (391 aa)
LOC107791849pre-rRNA-processing protein ESF1-like. (742 aa)
LOC107791871Nucleolar protein 10-like. (385 aa)
LOC107791972Nucleolar protein 14-like. (173 aa)
LOC107792024U3 small nucleolar RNA-associated protein 21 homolog. (907 aa)
LOC107792015Uncharacterized protein LOC107792015. (169 aa)
LOC107793214WD repeat-containing protein 43-like isoform X1. (626 aa)
LOC107793502RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (639 aa)
LOC107793663pre-rRNA-processing protein ESF1-like. (742 aa)
LOC107793828Uncharacterized protein At3g06530-like isoform X1. (2110 aa)
LOC107793854U3 small nucleolar RNA-associated protein 4 homolog. (820 aa)
LOC107794332Transducin beta-like protein 3. (877 aa)
LOC107794512pre-rRNA-processing protein ESF2-like. (256 aa)
LOC107794852Ribosomal RNA processing protein 36 homolog. (247 aa)
LOC107795459pre-rRNA-processing protein TSR1 homolog. (470 aa)
LOC107795961ATP-dependent RNA helicase DEAH13-like. (943 aa)
LOC107795963Uncharacterized protein At3g06530 isoform X1. (2150 aa)
LOC107796022WD repeat-containing protein 43-like isoform X1. (604 aa)
LOC107796991Nucleolar protein 56-like. (548 aa)
LOC107797821Ribosomal RNA processing protein 36 homolog. (246 aa)
LOC107798069Probable 18S rRNA (Guanine-N(7))-methyltransferase. (292 aa)
LOC107798399U3 small nucleolar RNA-associated protein 18 homolog. (500 aa)
LOC107799409U3 small nucleolar RNA-associated protein 18 homolog. (553 aa)
LOC107799512Bystin-like isoform X1. (461 aa)
LOC107800724Serine/threonine-protein kinase rio2-like. (455 aa)
LOC107800862Protein SLOW WALKER 1-like. (533 aa)
LOC107801239Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
LOC107801728Uncharacterized protein LOC107801728. (191 aa)
LOC107801952U3 small nucleolar RNA-associated protein 4 homolog. (820 aa)
LOC107802397U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (548 aa)
LOC107804052Uncharacterized protein LOC107804052. (356 aa)
LOC107804672Probable U3 small nucleolar RNA-associated protein 7. (535 aa)
LOC107807130Ribosomal RNA small subunit methyltransferase NEP1-like. (272 aa)
LOC107807302RNA-binding protein pno1-like. (214 aa)
LOC107807361Bystin-like isoform X1. (448 aa)
LOC107807360U3 small nucleolar RNA-associated protein 6 homolog isoform X1. (649 aa)
LOC107808458Ribosomal RNA small subunit methyltransferase NEP1-like. (277 aa)
LOC107808457Ribosomal RNA small subunit methyltransferase NEP1-like. (273 aa)
LOC10780863130S ribosomal protein S1, chloroplastic-like. (416 aa)
LOC107808627Neuroguidin-like isoform X1. (317 aa)
LOC107808925Uncharacterized protein LOC107808925. (446 aa)
LOC107810344Protein BFR2-like. (189 aa)
LOC107810614Probable U3 small nucleolar RNA-associated protein 7. (512 aa)
LOC107810650Protein LTV1 homolog isoform X1. (509 aa)
LOC107811333Something about silencing protein 10-like isoform X1. (657 aa)
LOC107811299U3 small nucleolar RNA-associated protein 18 homolog. (553 aa)
LOC107811722Uncharacterized protein. (426 aa)
LOC107813446Probable nucleolar protein 5-2. (558 aa)
LOC107815481U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (229 aa)
LOC107815595U3 small nucleolar RNA-associated protein 25-like. (747 aa)
LOC107816483Probable RNA 3'-terminal phosphate cyclase-like protein. (378 aa)
LOC107816520Nucleolar MIF4G domain-containing protein 1-like. (803 aa)
LOC107817035Uncharacterized protein LOC107817035. (191 aa)
LOC107817394WD repeat-containing protein 43-like. (578 aa)
LOC107817959Uncharacterized protein LOC107817959. (111 aa)
LOC107818006RNA-binding protein pno1-like. (214 aa)
LOC107817960Uncharacterized protein C57A7.06-like. (150 aa)
LOC107818203Uncharacterized protein LOC107818203. (409 aa)
LOC107818696WD repeat-containing protein 3-like. (952 aa)
LOC107820204Uncharacterized protein LOC107820204. (180 aa)
LOC107820340Uncharacterized protein LOC107820340 isoform X1. (223 aa)
LOC107820382RNA cytidine acetyltransferase 1-like. (780 aa)
LOC107820703Nucleolar complex protein 4 homolog B. (611 aa)
LOC107821000U3 small nucleolar RNA-associated protein 25-like. (748 aa)
LOC107821045RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (854 aa)
LOC107821552Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (158 aa)
LOC107821695rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (354 aa)
LOC107822073Protein LTV1 homolog. (512 aa)
LOC107822100U3 small nucleolar ribonucleoprotein protein MPP10-like. (438 aa)
LOC107823580U3 small nucleolar ribonucleoprotein protein IMP4-like. (234 aa)
LOC107823761U3 small nucleolar RNA-associated protein 6 homolog. (650 aa)
LOC107824171rRNA biogenesis protein RRP5-like. (366 aa)
LOC107825265Protein BFR2-like. (180 aa)
LOC107825975Nucleolar protein 56-like. (554 aa)
LOC107826245pre-rRNA-processing protein TSR1 homolog. (790 aa)
LOC107826465Small subunit processome component 20 homolog. (2679 aa)
LOC107826682DEAD-box ATP-dependent RNA helicase 10-like isoform X1; Belongs to the DEAD box helicase family. (442 aa)
LOC107826852RNA cytidine acetyltransferase 2-like. (264 aa)
LOC107827612DEAD-box ATP-dependent RNA helicase 36-like; Belongs to the DEAD box helicase family. (491 aa)
LOC107827900Nucleolar protein 10-like. (157 aa)
LOC107828407RNA-binding protein NOB1-like. (635 aa)
LOC107828340Nucleolar protein 10. (684 aa)
LOC107829068Transducin beta-like protein 3. (873 aa)
LOC107829301ATP-dependent DNA helicase homolog RECG, chloroplastic-like isoform X1. (1001 aa)
LOC107829442Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
LOC107829563ATP-dependent RNA helicase DEAH13-like. (428 aa)
LOC107830027U3 small nucleolar RNA-associated protein 14 homolog A-like. (895 aa)
LOC107830305Uncharacterized protein LOC107830305 isoform X1. (179 aa)
LOC107830417U3 snoRNP-associated protein-like YAOH. (517 aa)
LOC107831076RNA helicase. (747 aa)
LOC10783159930S ribosomal protein S1-like. (381 aa)
LOC107832006U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (229 aa)
LOC107832193Periodic tryptophan protein 2 homolog. (896 aa)
LOC107832749Uncharacterized protein LOC107832749. (170 aa)
NtFib1Mediator of RNA polymerase II transcription subunit 36a-like. (314 aa)
NtRIOSerine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (562 aa)
MARBPFProbable nucleolar protein 5-2. (555 aa)
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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