(18 nodes) Mixed, incl. ABT1/Esf2, and rRNA biogenesis protein RRP36 network (Nicotiana tabacum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107761366	pre-rRNA-processing protein ESF2-like. (256 aa)
	LOC107769025	Suppressor of glycerol defect protein 1-like. (652 aa)
	LOC107771807	pre-rRNA-processing protein ESF2-like. (256 aa)
	LOC107774289	Ribosomal RNA processing protein 36 homolog. (247 aa)
	LOC107779934	pre-rRNA-processing protein ESF2-like. (256 aa)
	LOC107783063	Ribosomal RNA processing protein 36 homolog. (247 aa)
	LOC107788613	RNA helicase. (746 aa)
	LOC107790640	DEAD-box ATP-dependent RNA helicase 36-like; Belongs to the DEAD box helicase family. (492 aa)
	LOC107791849	pre-rRNA-processing protein ESF1-like. (742 aa)
	LOC107793663	pre-rRNA-processing protein ESF1-like. (742 aa)
	LOC107794512	pre-rRNA-processing protein ESF2-like. (256 aa)
	LOC107794852	Ribosomal RNA processing protein 36 homolog. (247 aa)
	LOC107797821	Ribosomal RNA processing protein 36 homolog. (246 aa)
	LOC107815595	U3 small nucleolar RNA-associated protein 25-like. (747 aa)
	LOC107816520	Nucleolar MIF4G domain-containing protein 1-like. (803 aa)
	LOC107821000	U3 small nucleolar RNA-associated protein 25-like. (748 aa)
	LOC107827612	DEAD-box ATP-dependent RNA helicase 36-like; Belongs to the DEAD box helicase family. (491 aa)
	LOC107831076	RNA helicase. (747 aa)

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107761366	LOC107769025	A0A1S3X520	A0A1S3XUY1	pre-rRNA-processing protein ESF2-like.	Suppressor of glycerol defect protein 1-like.	0.863
LOC107761366	LOC107774289	A0A1S3X520	A0A1S3YAZ6	pre-rRNA-processing protein ESF2-like.	Ribosomal RNA processing protein 36 homolog.	0.957
LOC107761366	LOC107783063	A0A1S3X520	A0A1S3Z590	pre-rRNA-processing protein ESF2-like.	Ribosomal RNA processing protein 36 homolog.	0.957
LOC107761366	LOC107788613	A0A1S3X520	A0A1S3ZMM2	pre-rRNA-processing protein ESF2-like.	RNA helicase.	0.957
LOC107761366	LOC107790640	A0A1S3X520	A0A1S3ZUT5	pre-rRNA-processing protein ESF2-like.	DEAD-box ATP-dependent RNA helicase 36-like; Belongs to the DEAD box helicase family.	0.952
LOC107761366	LOC107791849	A0A1S3X520	A0A1S3ZYG5	pre-rRNA-processing protein ESF2-like.	pre-rRNA-processing protein ESF1-like.	0.950
LOC107761366	LOC107793663	A0A1S3X520	A0A1S4A4M3	pre-rRNA-processing protein ESF2-like.	pre-rRNA-processing protein ESF1-like.	0.950
LOC107761366	LOC107794852	A0A1S3X520	A0A1S4A8B1	pre-rRNA-processing protein ESF2-like.	Ribosomal RNA processing protein 36 homolog.	0.957
LOC107761366	LOC107797821	A0A1S3X520	A0A1S4AHQ3	pre-rRNA-processing protein ESF2-like.	Ribosomal RNA processing protein 36 homolog.	0.957
LOC107761366	LOC107815595	A0A1S3X520	A0A1S4C6D8	pre-rRNA-processing protein ESF2-like.	U3 small nucleolar RNA-associated protein 25-like.	0.944
LOC107761366	LOC107816520	A0A1S3X520	A0A1S4C911	pre-rRNA-processing protein ESF2-like.	Nucleolar MIF4G domain-containing protein 1-like.	0.863
LOC107761366	LOC107821000	A0A1S3X520	A0A1S4CNQ0	pre-rRNA-processing protein ESF2-like.	U3 small nucleolar RNA-associated protein 25-like.	0.944
LOC107761366	LOC107827612	A0A1S3X520	A0A1S4DA32	pre-rRNA-processing protein ESF2-like.	DEAD-box ATP-dependent RNA helicase 36-like; Belongs to the DEAD box helicase family.	0.952
LOC107761366	LOC107831076	A0A1S3X520	A0A1S4DM87	pre-rRNA-processing protein ESF2-like.	RNA helicase.	0.957
LOC107769025	LOC107761366	A0A1S3XUY1	A0A1S3X520	Suppressor of glycerol defect protein 1-like.	pre-rRNA-processing protein ESF2-like.	0.863
LOC107769025	LOC107771807	A0A1S3XUY1	A0A1S3Y3F3	Suppressor of glycerol defect protein 1-like.	pre-rRNA-processing protein ESF2-like.	0.863
LOC107769025	LOC107774289	A0A1S3XUY1	A0A1S3YAZ6	Suppressor of glycerol defect protein 1-like.	Ribosomal RNA processing protein 36 homolog.	0.912
LOC107769025	LOC107779934	A0A1S3XUY1	A0A1S3YUW4	Suppressor of glycerol defect protein 1-like.	pre-rRNA-processing protein ESF2-like.	0.863
LOC107769025	LOC107783063	A0A1S3XUY1	A0A1S3Z590	Suppressor of glycerol defect protein 1-like.	Ribosomal RNA processing protein 36 homolog.	0.912
LOC107769025	LOC107788613	A0A1S3XUY1	A0A1S3ZMM2	Suppressor of glycerol defect protein 1-like.	RNA helicase.	0.975