(13 nodes) Mixed, incl. POLYCHOME/GIGAS CELL1, and Shugoshin, plant network (Nicotiana tabacum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107762740	Shugoshin-1-like. (210 aa)
	LOC107764020	F-box protein At5g07610-like. (407 aa)
	LOC107764569	Uncharacterized protein LOC107764569 isoform X1. (241 aa)
	LOC107784044	Uncharacterized protein LOC107784044. (275 aa)
	LOC107791639	F-box protein SKIP23-like. (454 aa)
	LOC107805722	F-box protein At5g07610-like. (414 aa)
	LOC107806643	Protein POLYCHOME-like. (253 aa)
	LOC107812223	F-box protein At5g07610-like. (412 aa)
	LOC107812224	F-box protein At5g07610-like isoform X1. (411 aa)
	LOC107819686	Uncharacterized protein LOC107819686. (415 aa)
	LOC107824196	Protein POLYCHOME-like isoform X1. (263 aa)
	LOC107826340	F-box protein SKIP23-like. (327 aa)
	LOC107827036	F-box/kelch-repeat protein At3g23880-like. (383 aa)

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107762740	LOC107764020	A0A1S3X9X2	A0A1S3XDK9	Shugoshin-1-like.	F-box protein At5g07610-like.	0.492
LOC107762740	LOC107784044	A0A1S3X9X2	A0A1S3Z866	Shugoshin-1-like.	Uncharacterized protein LOC107784044.	0.404
LOC107762740	LOC107805722	A0A1S3X9X2	A0A1S4B908	Shugoshin-1-like.	F-box protein At5g07610-like.	0.409
LOC107762740	LOC107806643	A0A1S3X9X2	A0A1S4BBY2	Shugoshin-1-like.	Protein POLYCHOME-like.	0.434
LOC107762740	LOC107812223	A0A1S3X9X2	A0A1S4BV63	Shugoshin-1-like.	F-box protein At5g07610-like.	0.499
LOC107762740	LOC107812224	A0A1S3X9X2	A0A1S4BV69	Shugoshin-1-like.	F-box protein At5g07610-like isoform X1.	0.442
LOC107762740	LOC107824196	A0A1S3X9X2	A0A1S4CZ32	Shugoshin-1-like.	Protein POLYCHOME-like isoform X1.	0.418
LOC107764020	LOC107762740	A0A1S3XDK9	A0A1S3X9X2	F-box protein At5g07610-like.	Shugoshin-1-like.	0.492
LOC107764020	LOC107784044	A0A1S3XDK9	A0A1S3Z866	F-box protein At5g07610-like.	Uncharacterized protein LOC107784044.	0.476
LOC107764020	LOC107791639	A0A1S3XDK9	A0A1S3ZXZ8	F-box protein At5g07610-like.	F-box protein SKIP23-like.	0.485
LOC107764020	LOC107806643	A0A1S3XDK9	A0A1S4BBY2	F-box protein At5g07610-like.	Protein POLYCHOME-like.	0.441
LOC107764020	LOC107819686	A0A1S3XDK9	A0A1S4CJA9	F-box protein At5g07610-like.	Uncharacterized protein LOC107819686.	0.451
LOC107764020	LOC107824196	A0A1S3XDK9	A0A1S4CZ32	F-box protein At5g07610-like.	Protein POLYCHOME-like isoform X1.	0.464
LOC107764020	LOC107826340	A0A1S3XDK9	A0A1S4D684	F-box protein At5g07610-like.	F-box protein SKIP23-like.	0.494
LOC107764569	LOC107784044	A0A1S3XFP8	A0A1S3Z866	Uncharacterized protein LOC107764569 isoform X1.	Uncharacterized protein LOC107784044.	0.403
LOC107764569	LOC107805722	A0A1S3XFP8	A0A1S4B908	Uncharacterized protein LOC107764569 isoform X1.	F-box protein At5g07610-like.	0.451
LOC107784044	LOC107762740	A0A1S3Z866	A0A1S3X9X2	Uncharacterized protein LOC107784044.	Shugoshin-1-like.	0.404
LOC107784044	LOC107764020	A0A1S3Z866	A0A1S3XDK9	Uncharacterized protein LOC107784044.	F-box protein At5g07610-like.	0.476
LOC107784044	LOC107764569	A0A1S3Z866	A0A1S3XFP8	Uncharacterized protein LOC107784044.	Uncharacterized protein LOC107764569 isoform X1.	0.403
LOC107784044	LOC107791639	A0A1S3Z866	A0A1S3ZXZ8	Uncharacterized protein LOC107784044.	F-box protein SKIP23-like.	0.489