(6 nodes) Mixed, incl. Protein BPS1, and Protein BIG GRAIN 1-like network (Nicotiana tabacum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107764457	Protein BIG GRAIN 1-like A. (356 aa)
	LOC107771113	Uncharacterized protein LOC107771113. (254 aa)
	LOC107784519	Uncharacterized protein LOC107784519. (135 aa)
	LOC107815270	Uncharacterized protein LOC107815270. (121 aa)
	LOC107820315	Uncharacterized protein LOC107820315. (450 aa)
	LOC107822245	Uncharacterized protein LOC107822245. (158 aa)

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107764457	LOC107771113	A0A1S3XFB1	A0A1S3Y1B5	Protein BIG GRAIN 1-like A.	Uncharacterized protein LOC107771113.	0.501
LOC107764457	LOC107784519	A0A1S3XFB1	A0A1S3Z9W0	Protein BIG GRAIN 1-like A.	Uncharacterized protein LOC107784519.	0.498
LOC107764457	LOC107815270	A0A1S3XFB1	A0A1S4C5E2	Protein BIG GRAIN 1-like A.	Uncharacterized protein LOC107815270.	0.439
LOC107764457	LOC107820315	A0A1S3XFB1	A0A1S4CLZ1	Protein BIG GRAIN 1-like A.	Uncharacterized protein LOC107820315.	0.497
LOC107764457	LOC107822245	A0A1S3XFB1	A0A1S4CSK6	Protein BIG GRAIN 1-like A.	Uncharacterized protein LOC107822245.	0.523
LOC107771113	LOC107764457	A0A1S3Y1B5	A0A1S3XFB1	Uncharacterized protein LOC107771113.	Protein BIG GRAIN 1-like A.	0.501
LOC107771113	LOC107784519	A0A1S3Y1B5	A0A1S3Z9W0	Uncharacterized protein LOC107771113.	Uncharacterized protein LOC107784519.	0.437
LOC107771113	LOC107815270	A0A1S3Y1B5	A0A1S4C5E2	Uncharacterized protein LOC107771113.	Uncharacterized protein LOC107815270.	0.449
LOC107771113	LOC107820315	A0A1S3Y1B5	A0A1S4CLZ1	Uncharacterized protein LOC107771113.	Uncharacterized protein LOC107820315.	0.499
LOC107771113	LOC107822245	A0A1S3Y1B5	A0A1S4CSK6	Uncharacterized protein LOC107771113.	Uncharacterized protein LOC107822245.	0.532
LOC107784519	LOC107764457	A0A1S3Z9W0	A0A1S3XFB1	Uncharacterized protein LOC107784519.	Protein BIG GRAIN 1-like A.	0.498
LOC107784519	LOC107771113	A0A1S3Z9W0	A0A1S3Y1B5	Uncharacterized protein LOC107784519.	Uncharacterized protein LOC107771113.	0.437
LOC107784519	LOC107815270	A0A1S3Z9W0	A0A1S4C5E2	Uncharacterized protein LOC107784519.	Uncharacterized protein LOC107815270.	0.509
LOC107784519	LOC107820315	A0A1S3Z9W0	A0A1S4CLZ1	Uncharacterized protein LOC107784519.	Uncharacterized protein LOC107820315.	0.469
LOC107784519	LOC107822245	A0A1S3Z9W0	A0A1S4CSK6	Uncharacterized protein LOC107784519.	Uncharacterized protein LOC107822245.	0.507
LOC107815270	LOC107764457	A0A1S4C5E2	A0A1S3XFB1	Uncharacterized protein LOC107815270.	Protein BIG GRAIN 1-like A.	0.439
LOC107815270	LOC107771113	A0A1S4C5E2	A0A1S3Y1B5	Uncharacterized protein LOC107815270.	Uncharacterized protein LOC107771113.	0.449
LOC107815270	LOC107784519	A0A1S4C5E2	A0A1S3Z9W0	Uncharacterized protein LOC107815270.	Uncharacterized protein LOC107784519.	0.509
LOC107815270	LOC107820315	A0A1S4C5E2	A0A1S4CLZ1	Uncharacterized protein LOC107815270.	Uncharacterized protein LOC107820315.	0.444
LOC107815270	LOC107822245	A0A1S4C5E2	A0A1S4CSK6	Uncharacterized protein LOC107815270.	Uncharacterized protein LOC107822245.	0.500