(6 nodes) Mixed, incl. Mitochondrial ribosome binding, and GTP-binding protein BipA, domain 3 network (Nicotiana tabacum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107765312	Uncharacterized protein LOC107765312. (171 aa)
	LOC107772906	Uncharacterized protein LOC107772906. (108 aa)
	LOC107783332	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. (599 aa)
	LOC107803086	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (656 aa)
	LOC107805650	GTP-binding protein TypA/BipA homolog. (679 aa)
	LOC107827209	Cyclic phosphodiesterase-like. (196 aa)

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107765312	LOC107803086	A0A1S3XHU8	A0A1S4AZR0	Uncharacterized protein LOC107765312.	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	0.526
LOC107765312	LOC107805650	A0A1S3XHU8	A0A1S4B8J4	Uncharacterized protein LOC107765312.	GTP-binding protein TypA/BipA homolog.	0.526
LOC107772906	LOC107803086	A0A1S3Y6L0	A0A1S4AZR0	Uncharacterized protein LOC107772906.	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	0.400
LOC107772906	LOC107805650	A0A1S3Y6L0	A0A1S4B8J4	Uncharacterized protein LOC107772906.	GTP-binding protein TypA/BipA homolog.	0.400
LOC107772906	LOC107827209	A0A1S3Y6L0	A0A1S4D8P3	Uncharacterized protein LOC107772906.	Cyclic phosphodiesterase-like.	0.441
LOC107783332	LOC107803086	A0A1S3Z608	A0A1S4AZR0	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	0.526
LOC107783332	LOC107805650	A0A1S3Z608	A0A1S4B8J4	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	GTP-binding protein TypA/BipA homolog.	0.526
LOC107803086	LOC107765312	A0A1S4AZR0	A0A1S3XHU8	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	Uncharacterized protein LOC107765312.	0.526
LOC107803086	LOC107772906	A0A1S4AZR0	A0A1S3Y6L0	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	Uncharacterized protein LOC107772906.	0.400
LOC107803086	LOC107783332	A0A1S4AZR0	A0A1S3Z608	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.526
LOC107805650	LOC107765312	A0A1S4B8J4	A0A1S3XHU8	GTP-binding protein TypA/BipA homolog.	Uncharacterized protein LOC107765312.	0.526
LOC107805650	LOC107772906	A0A1S4B8J4	A0A1S3Y6L0	GTP-binding protein TypA/BipA homolog.	Uncharacterized protein LOC107772906.	0.400
LOC107805650	LOC107783332	A0A1S4B8J4	A0A1S3Z608	GTP-binding protein TypA/BipA homolog.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.526
LOC107827209	LOC107772906	A0A1S4D8P3	A0A1S3Y6L0	Cyclic phosphodiesterase-like.	Uncharacterized protein LOC107772906.	0.441