29 items (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107805962	Uncharacterized protein LOC107805962. (208 aa)
	rps19	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (94 aa)
	rps18	Ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family. (101 aa)
	rps11	Ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (138 aa)
	rps19-2	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (92 aa)
	LOC107759385	Probable ribosomal protein S11, mitochondrial isoform X1. (236 aa)
	LOC107763959	Uncharacterized protein LOC107763959; Belongs to the bacterial ribosomal protein bS18 family. (269 aa)
	LOC107767274	Probable ribosomal protein S11, mitochondrial. (233 aa)
	LOC107770348	Uncharacterized protein LOC107770348; Belongs to the universal ribosomal protein uS5 family. (498 aa)
	LOC107772463	Uncharacterized protein LOC107772463. (245 aa)
	LOC107775616	Uncharacterized protein LOC107775616. (427 aa)
	LOC107777020	Ribosomal protein S19, mitochondrial-like; Belongs to the universal ribosomal protein uS19 family. (144 aa)
	LOC107790845	28S ribosomal protein S9, mitochondrial-like; Belongs to the universal ribosomal protein uS9 family. (397 aa)
	LOC107793966	Uncharacterized protein LOC107793966. (105 aa)
	LOC107801182	30S ribosomal protein S5, chloroplastic-like. (301 aa)
	LOC107801405	Uncharacterized protein LOC107801405. (130 aa)
	LOC107812456	Uncharacterized protein LOC107812456; Belongs to the universal ribosomal protein uS5 family. (498 aa)
	LOC107817791	28S ribosomal protein S9, mitochondrial-like; Belongs to the universal ribosomal protein uS9 family. (397 aa)
	LOC107819301	Uncharacterized protein LOC107819301. (427 aa)
	LOC107819303	Uncharacterized protein LOC107819303. (127 aa)
	LOC107821542	Probable ribosomal protein S11, mitochondrial. (223 aa)
	LOC107824654	Uncharacterized protein LOC107824654. (129 aa)
	LOC107825411	30S ribosomal protein S5, chloroplastic; Belongs to the universal ribosomal protein uS5 family. (297 aa)
	LOC107825867	30S ribosomal protein S5, chloroplastic-like. (235 aa)
	LOC107827312	Uncharacterized protein LOC107827312; Belongs to the bacterial ribosomal protein bS18 family. (269 aa)
	LOC107827568	30S ribosomal protein S5-like. (171 aa)
	LOC107829272	Uncharacterized protein LOC107829272. (452 aa)
	LOC107829803	Probable ribosomal protein S11, mitochondrial isoform X1. (235 aa)
	rps10	Ribosomal protein S10. (120 aa)

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107759385	LOC107763959	A0A1S3WZ42	A0A1S3XDD9	Probable ribosomal protein S11, mitochondrial isoform X1.	Uncharacterized protein LOC107763959; Belongs to the bacterial ribosomal protein bS18 family.	0.811
LOC107759385	LOC107767274	A0A1S3WZ42	A0A1S3XP33	Probable ribosomal protein S11, mitochondrial isoform X1.	Probable ribosomal protein S11, mitochondrial.	0.543
LOC107759385	LOC107770348	A0A1S3WZ42	A0A1S3XZK5	Probable ribosomal protein S11, mitochondrial isoform X1.	Uncharacterized protein LOC107770348; Belongs to the universal ribosomal protein uS5 family.	0.799
LOC107759385	LOC107772463	A0A1S3WZ42	A0A1S3Y6C8	Probable ribosomal protein S11, mitochondrial isoform X1.	Uncharacterized protein LOC107772463.	0.737
LOC107759385	LOC107775616	A0A1S3WZ42	A0A1S3YFI0	Probable ribosomal protein S11, mitochondrial isoform X1.	Uncharacterized protein LOC107775616.	0.737
LOC107759385	LOC107777020	A0A1S3WZ42	A0A1S3YKA0	Probable ribosomal protein S11, mitochondrial isoform X1.	Ribosomal protein S19, mitochondrial-like; Belongs to the universal ribosomal protein uS19 family.	0.799
LOC107759385	LOC107790845	A0A1S3WZ42	A0A1S3ZVE9	Probable ribosomal protein S11, mitochondrial isoform X1.	28S ribosomal protein S9, mitochondrial-like; Belongs to the universal ribosomal protein uS9 family.	0.799
LOC107759385	LOC107801182	A0A1S3WZ42	A0A1S4AT91	Probable ribosomal protein S11, mitochondrial isoform X1.	30S ribosomal protein S5, chloroplastic-like.	0.557
LOC107759385	LOC107805962	A0A1S3WZ42	A0A1S4B9K9	Probable ribosomal protein S11, mitochondrial isoform X1.	Uncharacterized protein LOC107805962.	0.873
LOC107759385	LOC107812456	A0A1S3WZ42	A0A1S4BW49	Probable ribosomal protein S11, mitochondrial isoform X1.	Uncharacterized protein LOC107812456; Belongs to the universal ribosomal protein uS5 family.	0.799
LOC107759385	LOC107817791	A0A1S3WZ42	A0A1S4CDW5	Probable ribosomal protein S11, mitochondrial isoform X1.	28S ribosomal protein S9, mitochondrial-like; Belongs to the universal ribosomal protein uS9 family.	0.799
LOC107759385	LOC107819301	A0A1S3WZ42	A0A1S4CI53	Probable ribosomal protein S11, mitochondrial isoform X1.	Uncharacterized protein LOC107819301.	0.737
LOC107759385	LOC107821542	A0A1S3WZ42	A0A1S4CQF3	Probable ribosomal protein S11, mitochondrial isoform X1.	Probable ribosomal protein S11, mitochondrial.	0.540
LOC107759385	LOC107824654	A0A1S3WZ42	A0A1S4D0U6	Probable ribosomal protein S11, mitochondrial isoform X1.	Uncharacterized protein LOC107824654.	0.873
LOC107759385	LOC107825411	A0A1S3WZ42	A0A1S4D2U5	Probable ribosomal protein S11, mitochondrial isoform X1.	30S ribosomal protein S5, chloroplastic; Belongs to the universal ribosomal protein uS5 family.	0.557
LOC107759385	LOC107825867	A0A1S3WZ42	A0A1S4D4D9	Probable ribosomal protein S11, mitochondrial isoform X1.	30S ribosomal protein S5, chloroplastic-like.	0.557
LOC107759385	LOC107827312	A0A1S3WZ42	A0A1S4D8X5	Probable ribosomal protein S11, mitochondrial isoform X1.	Uncharacterized protein LOC107827312; Belongs to the bacterial ribosomal protein bS18 family.	0.811
LOC107759385	LOC107827568	A0A1S3WZ42	A0A1S4D9T7	Probable ribosomal protein S11, mitochondrial isoform X1.	30S ribosomal protein S5-like.	0.557
LOC107759385	LOC107829272	A0A1S3WZ42	A0A1S4DFW9	Probable ribosomal protein S11, mitochondrial isoform X1.	Uncharacterized protein LOC107829272.	0.873
LOC107759385	LOC107829803	A0A1S3WZ42	A0A1S4DHB0	Probable ribosomal protein S11, mitochondrial isoform X1.	Probable ribosomal protein S11, mitochondrial isoform X1.	0.543