(49 nodes) snoRNA binding network (Nicotiana tabacum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107758953	H/ACA ribonucleoprotein complex subunit 3-like protein. (64 aa)
	LOC107761264	Nucleolar protein 14. (948 aa)
	LOC107762965	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (185 aa)
	LOC107763606	Nucleolar protein 56-like. (545 aa)
	LOC107763935	pre-rRNA-processing protein TSR1 homolog. (213 aa)
	LOC107764143	WD repeat-containing protein 3-like isoform X1. (945 aa)
	LOC107764387	Uncharacterized protein LOC107764387. (283 aa)
	LOC107765316	Prostatic spermine-binding protein-like. (160 aa)
	LOC107766976	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (155 aa)
	LOC107768283	WD repeat-containing protein 3-like. (950 aa)
	LOC107772482	U3 small nucleolar ribonucleoprotein protein IMP3-like. (182 aa)
	LOC107774303	Nucleolar protein 14-like. (218 aa)
	LOC107775353	Brix domain-containing protein ZK795.3-like. (156 aa)
	LOC107775574	U3 small nucleolar ribonucleoprotein protein IMP4. (293 aa)
	LOC107777096	Ribosome biogenesis protein BMS1 homolog. (1013 aa)
	LOC107778705	Phosphopantothenoylcysteine decarboxylase subunit VHS3-like. (159 aa)
	LOC107778989	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (185 aa)
	LOC107780697	U3 snoRNP-associated protein-like YAOH. (517 aa)
	LOC107781009	Ribosome biogenesis protein BMS1 homolog. (178 aa)
	LOC107781801	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (166 aa)
	LOC107785039	Transducin beta-like protein 3. (862 aa)
	LOC107786310	U3 small nucleolar ribonucleoprotein protein IMP4-like. (284 aa)
	LOC107787741	Nucleolar protein 14-like. (745 aa)
	LOC107788226	Ribosome biogenesis protein BMS1 homolog. (1222 aa)
	LOC107789005	H/ACA ribonucleoprotein complex subunit 3-like protein. (87 aa)
	LOC107790134	H/ACA ribonucleoprotein complex subunit 2-like protein. (182 aa)
	LOC107791972	Nucleolar protein 14-like. (173 aa)
	LOC107793492	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (155 aa)
	LOC107793828	Uncharacterized protein At3g06530-like isoform X1. (2110 aa)
	LOC107794332	Transducin beta-like protein 3. (877 aa)
	LOC107795459	pre-rRNA-processing protein TSR1 homolog. (470 aa)
	LOC107795963	Uncharacterized protein At3g06530 isoform X1. (2150 aa)
	LOC107796991	Nucleolar protein 56-like. (548 aa)
	LOC107799512	Bystin-like isoform X1. (461 aa)
	LOC107801398	H/ACA ribonucleoprotein complex subunit 3-like protein. (64 aa)
	LOC107805678	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (189 aa)
	LOC107807361	Bystin-like isoform X1. (448 aa)
	LOC107807360	U3 small nucleolar RNA-associated protein 6 homolog isoform X1. (649 aa)
	LOC107813446	Probable nucleolar protein 5-2. (558 aa)
	LOC107815595	U3 small nucleolar RNA-associated protein 25-like. (747 aa)
	LOC107818696	WD repeat-containing protein 3-like. (952 aa)
	LOC107821000	U3 small nucleolar RNA-associated protein 25-like. (748 aa)
	LOC107823580	U3 small nucleolar ribonucleoprotein protein IMP4-like. (234 aa)
	LOC107823761	U3 small nucleolar RNA-associated protein 6 homolog. (650 aa)
	LOC107825975	Nucleolar protein 56-like. (554 aa)
	LOC107826245	pre-rRNA-processing protein TSR1 homolog. (790 aa)
	LOC107829068	Transducin beta-like protein 3. (873 aa)
	LOC107830417	U3 snoRNP-associated protein-like YAOH. (517 aa)
	MARBPF	Probable nucleolar protein 5-2. (555 aa)

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107758953	LOC107762965	A0A1S3WX93	A0A1S3XAL0	H/ACA ribonucleoprotein complex subunit 3-like protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.991
LOC107758953	LOC107763606	A0A1S3WX93	A0A1S3XCF3	H/ACA ribonucleoprotein complex subunit 3-like protein.	Nucleolar protein 56-like.	0.846
LOC107758953	LOC107766976	A0A1S3WX93	A0A1S3XNF3	H/ACA ribonucleoprotein complex subunit 3-like protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.997
LOC107758953	LOC107772482	A0A1S3WX93	A0A1S3Y6D7	H/ACA ribonucleoprotein complex subunit 3-like protein.	U3 small nucleolar ribonucleoprotein protein IMP3-like.	0.688
LOC107758953	LOC107775353	A0A1S3WX93	A0A1S3YEY4	H/ACA ribonucleoprotein complex subunit 3-like protein.	Brix domain-containing protein ZK795.3-like.	0.429
LOC107758953	LOC107775574	A0A1S3WX93	A0A1S3YF65	H/ACA ribonucleoprotein complex subunit 3-like protein.	U3 small nucleolar ribonucleoprotein protein IMP4.	0.429
LOC107758953	LOC107777096	A0A1S3WX93	A0A1S3YK00	H/ACA ribonucleoprotein complex subunit 3-like protein.	Ribosome biogenesis protein BMS1 homolog.	0.493
LOC107758953	LOC107778989	A0A1S3WX93	A0A1S3YS78	H/ACA ribonucleoprotein complex subunit 3-like protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.991
LOC107758953	LOC107780697	A0A1S3WX93	A0A1S3YXE6	H/ACA ribonucleoprotein complex subunit 3-like protein.	U3 snoRNP-associated protein-like YAOH.	0.492
LOC107758953	LOC107781009	A0A1S3WX93	A0A1S3YY47	H/ACA ribonucleoprotein complex subunit 3-like protein.	Ribosome biogenesis protein BMS1 homolog.	0.493
LOC107758953	LOC107781801	A0A1S3WX93	A0A1S3Z0Q9	H/ACA ribonucleoprotein complex subunit 3-like protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.997
LOC107758953	LOC107786310	A0A1S3WX93	A0A1S3ZG37	H/ACA ribonucleoprotein complex subunit 3-like protein.	U3 small nucleolar ribonucleoprotein protein IMP4-like.	0.429
LOC107758953	LOC107788226	A0A1S3WX93	A0A1S3ZMA0	H/ACA ribonucleoprotein complex subunit 3-like protein.	Ribosome biogenesis protein BMS1 homolog.	0.493
LOC107758953	LOC107789005	A0A1S3WX93	A0A1S3ZPM0	H/ACA ribonucleoprotein complex subunit 3-like protein.	H/ACA ribonucleoprotein complex subunit 3-like protein.	0.901
LOC107758953	LOC107790134	A0A1S3WX93	A0A1S3ZSY6	H/ACA ribonucleoprotein complex subunit 3-like protein.	H/ACA ribonucleoprotein complex subunit 2-like protein.	0.997
LOC107758953	LOC107793492	A0A1S3WX93	A0A1S4A3Y1	H/ACA ribonucleoprotein complex subunit 3-like protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.997
LOC107758953	LOC107793828	A0A1S3WX93	A0A1S4A567	H/ACA ribonucleoprotein complex subunit 3-like protein.	Uncharacterized protein At3g06530-like isoform X1.	0.509
LOC107758953	LOC107795963	A0A1S3WX93	A0A1S4ABX4	H/ACA ribonucleoprotein complex subunit 3-like protein.	Uncharacterized protein At3g06530 isoform X1.	0.509
LOC107758953	LOC107796991	A0A1S3WX93	A0A1S4AF91	H/ACA ribonucleoprotein complex subunit 3-like protein.	Nucleolar protein 56-like.	0.846
LOC107758953	LOC107799512	A0A1S3WX93	A0A1S4ANS4	H/ACA ribonucleoprotein complex subunit 3-like protein.	Bystin-like isoform X1.	0.434