(88 nodes) SCF ubiquitin ligase complex network (Nicotiana tabacum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107768364	F-box protein SKIP1-like. (307 aa)
	LOC107759896	RING-box protein 1a isoform X1. (134 aa)
	LOC107760641	F-box protein SKIP16-like. (442 aa)
	LOC107762429	F-box/LRR-repeat protein 2-like. (412 aa)
	LOC107762854	F-box protein At4g02760-like. (535 aa)
	LOC107763036	F-box protein GID2-like. (128 aa)
	LOC107764019	SKP1-like protein 1B; Belongs to the SKP1 family. (165 aa)
	LOC107764726	Transport inhibitor response 1-like protein. (623 aa)
	LOC107766968	SKP1-like protein 11; Belongs to the SKP1 family. (98 aa)
	LOC107767506	F-box/LRR-repeat protein 12-like. (390 aa)
	LOC107768668	SKP1-like protein 4; Belongs to the SKP1 family. (180 aa)
	LOC107768666	SKP1-like protein 12; Belongs to the SKP1 family. (168 aa)
	LOC107769845	Protein TRANSPORT INHIBITOR RESPONSE 1-like. (403 aa)
	LOC107770213	Protein TRANSPORT INHIBITOR RESPONSE 1-like. (256 aa)
	LOC107772501	SKP1-like protein 1A; Belongs to the SKP1 family. (153 aa)
	LOC107773230	SKP1-like protein 11; Belongs to the SKP1 family. (165 aa)
	LOC107773372	Protein TRANSPORT INHIBITOR RESPONSE 1-like. (164 aa)
	LOC107775221	Adagio protein 1-like. (628 aa)
	LOC107775581	F-box protein SKP2A-like. (367 aa)
	LOC107776078	F-box/LRR-repeat protein 14-like. (556 aa)
	LOC107776199	RING-box protein 1a-like. (101 aa)
	LOC107777555	F-box/LRR-repeat protein 2-like. (412 aa)
	LOC107777586	SKP1-like protein 11; Belongs to the SKP1 family. (223 aa)
	LOC107778447	F-box protein GID2-like. (225 aa)
	LOC107779812	F-box/LRR-repeat protein 4-like isoform X1. (593 aa)
	LOC107780326	RING-box protein 1a-like. (123 aa)
	LOC107781709	SKP1-like protein 11; Belongs to the SKP1 family. (158 aa)
	LOC107781710	SKP1-like protein 12; Belongs to the SKP1 family. (171 aa)
	LOC107781894	Protein AUXIN SIGNALING F-BOX 2-like. (579 aa)
	LOC107783609	F-box protein SKP2A-like. (367 aa)
	LOC107784644	RING-box protein 1a-like. (120 aa)
	LOC107786372	Adagio protein 1-like. (628 aa)
	LOC107786549	SKP1-like protein 1A; Belongs to the SKP1 family. (153 aa)
	LOC107787065	F-box/LRR-repeat protein 3. (678 aa)
	LOC107787797	SKP1-like protein 11; Belongs to the SKP1 family. (178 aa)
	LOC107788525	F-box protein SKIP16-like. (443 aa)
	LOC107789933	Protein AUXIN SIGNALING F-BOX 2-like. (579 aa)
	LOC107789974	SKP1-like protein 1A; Belongs to the SKP1 family. (156 aa)
	LOC107791833	Protein TRANSPORT INHIBITOR RESPONSE 1-like. (581 aa)
	LOC107794082	SKP1-like protein 11; Belongs to the SKP1 family. (174 aa)
	LOC107794237	SKP1-like protein 1B; Belongs to the SKP1 family. (151 aa)
	LOC107795903	Probable F-box protein At1g60180. (401 aa)
	LOC107796573	F-box/kelch-repeat protein At5g42350-like. (402 aa)
	LOC107796822	SKP1-like protein 1B; Belongs to the SKP1 family. (164 aa)
	LOC107798377	SKP1-like protein 11 isoform X1; Belongs to the SKP1 family. (168 aa)
	LOC107802971	F-box/LRR-repeat protein 3-like. (533 aa)
	LOC107804509	F-box protein SKIP1-like. (308 aa)
	LOC107804508	Putative F-box/LRR-repeat protein 19. (160 aa)
	LOC107805703	SKP1-like protein 1B; Belongs to the SKP1 family. (151 aa)
	LOC107808698	SKP1-like protein 11; Belongs to the SKP1 family. (165 aa)
	LOC107808699	SKP1-like protein 11; Belongs to the SKP1 family. (165 aa)
	LOC107809613	Protein TRANSPORT INHIBITOR RESPONSE 1-like. (259 aa)
	LOC107810125	SKP1-like protein 11; Belongs to the SKP1 family. (165 aa)
	LOC107811193	SKP1-like protein 11. (130 aa)
	LOC107811202	SKP1-like protein 11; Belongs to the SKP1 family. (174 aa)
	LOC107811531	F-box protein At2g27310-like. (152 aa)
	LOC107811573	Protein TRANSPORT INHIBITOR RESPONSE 1-like. (585 aa)
	LOC107811863	F-box/LRR-repeat protein 12-like. (390 aa)
	LOC107812335	F-box protein At2g27310. (298 aa)
	LOC107812483	F-box/LRR-repeat protein 14-like isoform X1. (557 aa)
	LOC107812884	SKP1-like protein 1A; Belongs to the SKP1 family. (102 aa)
	LOC107815421	SKP1-like protein 11; Belongs to the SKP1 family. (165 aa)
	LOC107818340	F-box/kelch-repeat protein At5g42350-like. (579 aa)
	LOC107818988	Protein TRANSPORT INHIBITOR RESPONSE 1-like. (581 aa)
	LOC107819038	SKP1-like protein 11; Belongs to the SKP1 family. (207 aa)
	LOC107819036	SKP1-like protein 1B; Belongs to the SKP1 family. (166 aa)
	LOC107819327	SKP1-like protein 6; Belongs to the SKP1 family. (96 aa)
	LOC107820068	SKP1-like protein 21; Belongs to the SKP1 family. (313 aa)
	LOC107820523	F-box protein At2g27310-like. (375 aa)
	LOC107820734	F-box/kelch-repeat protein At5g42350-like. (579 aa)
	LOC107821218	Protein TRANSPORT INHIBITOR RESPONSE 1-like. (584 aa)
	LOC107822272	SKP1-like protein 1B; Belongs to the SKP1 family. (165 aa)
	LOC107822228	SKP1-like protein 11; Belongs to the SKP1 family. (165 aa)
	LOC107822281	E3 ubiquitin ligase complex SCF subunit sconC-like. (114 aa)
	LOC107822819	F-box/LRR-repeat protein 14-like isoform X1. (577 aa)
	LOC107823667	SKP1-like protein 21 isoform X1; Belongs to the SKP1 family. (354 aa)
	LOC107823572	SKP1-like protein 12; Belongs to the SKP1 family. (170 aa)
	LOC107824015	RING-box protein 1a-like. (116 aa)
	LOC107824328	F-box/LRR-repeat protein 14-like. (498 aa)
	LOC107827078	SKP1-like protein 1B; Belongs to the SKP1 family. (151 aa)
	LOC107827079	SKP1-like protein 1A; Belongs to the SKP1 family. (148 aa)
	LOC107827181	Probable F-box protein At1g60180. (401 aa)
	LOC107829306	RING-box protein 1a-like. (97 aa)
	LOC107832085	SKP1-like protein 21 isoform X1; Belongs to the SKP1 family. (360 aa)
	LOC107832421	F-box protein At4g02760-like. (537 aa)
	LOC107832683	F-box/LRR-repeat protein 4-like isoform X1. (592 aa)
	LOC107832817	Transport inhibitor response 1-like protein. (623 aa)
	SKP1	SKP1-like protein 1A; Belongs to the SKP1 family. (155 aa)

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107759896	LOC107762854	A0A1S3X0G1	A0A1S3XA07	RING-box protein 1a isoform X1.	F-box protein At4g02760-like.	0.580
LOC107759896	LOC107764019	A0A1S3X0G1	A0A1S3XDL0	RING-box protein 1a isoform X1.	SKP1-like protein 1B; Belongs to the SKP1 family.	0.687
LOC107759896	LOC107766968	A0A1S3X0G1	A0A1S3XNZ4	RING-box protein 1a isoform X1.	SKP1-like protein 11; Belongs to the SKP1 family.	0.724
LOC107759896	LOC107768666	A0A1S3X0G1	A0A1S3XTU9	RING-box protein 1a isoform X1.	SKP1-like protein 12; Belongs to the SKP1 family.	0.797
LOC107759896	LOC107768668	A0A1S3X0G1	A0A1S3XTM8	RING-box protein 1a isoform X1.	SKP1-like protein 4; Belongs to the SKP1 family.	0.796
LOC107759896	LOC107769845	A0A1S3X0G1	A0A1S3XXC0	RING-box protein 1a isoform X1.	Protein TRANSPORT INHIBITOR RESPONSE 1-like.	0.877
LOC107759896	LOC107770213	A0A1S3X0G1	A0A1S3XYR0	RING-box protein 1a isoform X1.	Protein TRANSPORT INHIBITOR RESPONSE 1-like.	0.525
LOC107759896	LOC107772501	A0A1S3X0G1	A0A1S3Y5Y3	RING-box protein 1a isoform X1.	SKP1-like protein 1A; Belongs to the SKP1 family.	0.787
LOC107759896	LOC107773230	A0A1S3X0G1	A0A1S3Y862	RING-box protein 1a isoform X1.	SKP1-like protein 11; Belongs to the SKP1 family.	0.687
LOC107759896	LOC107773372	A0A1S3X0G1	A0A1S3Y8A9	RING-box protein 1a isoform X1.	Protein TRANSPORT INHIBITOR RESPONSE 1-like.	0.498
LOC107759896	LOC107777586	A0A1S3X0G1	A0A1S3YLI5	RING-box protein 1a isoform X1.	SKP1-like protein 11; Belongs to the SKP1 family.	0.826
LOC107759896	LOC107781709	A0A1S3X0G1	A0A1S3Z0K9	RING-box protein 1a isoform X1.	SKP1-like protein 11; Belongs to the SKP1 family.	0.797
LOC107759896	LOC107781710	A0A1S3X0G1	A0A1S3Z0M5	RING-box protein 1a isoform X1.	SKP1-like protein 12; Belongs to the SKP1 family.	0.797
LOC107759896	LOC107786549	A0A1S3X0G1	A0A1S3ZGD3	RING-box protein 1a isoform X1.	SKP1-like protein 1A; Belongs to the SKP1 family.	0.787
LOC107759896	LOC107787797	A0A1S3X0G1	A0A1S3ZKV9	RING-box protein 1a isoform X1.	SKP1-like protein 11; Belongs to the SKP1 family.	0.796
LOC107759896	LOC107789974	A0A1S3X0G1	A0A1S3ZSR1	RING-box protein 1a isoform X1.	SKP1-like protein 1A; Belongs to the SKP1 family.	0.826
LOC107759896	LOC107791833	A0A1S3X0G1	A0A1S3ZYQ3	RING-box protein 1a isoform X1.	Protein TRANSPORT INHIBITOR RESPONSE 1-like.	0.870
LOC107759896	LOC107794082	A0A1S3X0G1	A0A1S4A5U5	RING-box protein 1a isoform X1.	SKP1-like protein 11; Belongs to the SKP1 family.	0.797
LOC107759896	LOC107794237	A0A1S3X0G1	A0A1S4A6H3	RING-box protein 1a isoform X1.	SKP1-like protein 1B; Belongs to the SKP1 family.	0.724
LOC107759896	LOC107796822	A0A1S3X0G1	A0A1S4AES9	RING-box protein 1a isoform X1.	SKP1-like protein 1B; Belongs to the SKP1 family.	0.687