(12 nodes) ATP-dependent DNA helicase RecQ, zinc-binding domain network (Nicotiana tabacum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107765327	ATP-dependent DNA helicase Q-like 4A isoform X1. (1186 aa)
	LOC107759901	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (726 aa)
	LOC107821048	ATP-dependent DNA helicase Q-like 4A isoform X1. (1185 aa)
	LOC107815379	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (267 aa)
	LOC107814520	Mediator of RNA polymerase II transcription subunit 34-like. (347 aa)
	LOC107814562	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (878 aa)
	LOC107814297	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (649 aa)
	LOC107813256	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (801 aa)
	LOC107793571	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (649 aa)
	LOC107791025	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (911 aa)
	LOC107778829	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (726 aa)
	LOC107761280	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (878 aa)

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107765327	LOC107821048	A0A1S3XHK2	A0A1S4CNU0	ATP-dependent DNA helicase Q-like 4A isoform X1.	ATP-dependent DNA helicase Q-like 4A isoform X1.	0.900
LOC107791025	LOC107813256	A0A1S3ZVZ3	A0A1S4BYK2	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.970
LOC107791025	LOC107814520	A0A1S3ZVZ3	A0A1S4C305	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	Mediator of RNA polymerase II transcription subunit 34-like.	0.410
LOC107813256	LOC107791025	A0A1S4BYK2	A0A1S3ZVZ3	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.970
LOC107813256	LOC107814520	A0A1S4BYK2	A0A1S4C305	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	Mediator of RNA polymerase II transcription subunit 34-like.	0.407
LOC107814520	LOC107791025	A0A1S4C305	A0A1S3ZVZ3	Mediator of RNA polymerase II transcription subunit 34-like.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.410
LOC107814520	LOC107813256	A0A1S4C305	A0A1S4BYK2	Mediator of RNA polymerase II transcription subunit 34-like.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.407
LOC107814520	LOC107815379	A0A1S4C305	A0A1S4C5H2	Mediator of RNA polymerase II transcription subunit 34-like.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.554
LOC107815379	LOC107814520	A0A1S4C5H2	A0A1S4C305	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	Mediator of RNA polymerase II transcription subunit 34-like.	0.554
LOC107821048	LOC107765327	A0A1S4CNU0	A0A1S3XHK2	ATP-dependent DNA helicase Q-like 4A isoform X1.	ATP-dependent DNA helicase Q-like 4A isoform X1.	0.900