(7 nodes) DNA clamp superfamily network (Nicotiana tabacum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107798041	Cell cycle checkpoint control protein RAD9A-like; Belongs to the rad9 family. (440 aa)
	LOC107779602	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (264 aa)
	LOC107778290	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (264 aa)
	LOC107830644	Uncharacterized protein LOC107830644 isoform X1. (304 aa)
	LOC107806587	Cell cycle checkpoint control protein RAD9A-like isoform X1; Belongs to the rad9 family. (440 aa)
	LOC107805580	Uncharacterized protein LOC107805580 isoform X1. (304 aa)
	PCNA	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (264 aa)

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107778290	LOC107779602	A0A1S3YP30	A0A1S3YU67	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.900
LOC107778290	PCNA	A0A1S3YP30	O82797	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.543
LOC107779602	LOC107778290	A0A1S3YU67	A0A1S3YP30	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.900
LOC107779602	PCNA	A0A1S3YU67	O82797	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.543
LOC107798041	LOC107805580	A0A1S4AIF2	A0A1S4B873	Cell cycle checkpoint control protein RAD9A-like; Belongs to the rad9 family.	Uncharacterized protein LOC107805580 isoform X1.	0.550
LOC107798041	LOC107806587	A0A1S4AIF2	A0A1S4BBK0	Cell cycle checkpoint control protein RAD9A-like; Belongs to the rad9 family.	Cell cycle checkpoint control protein RAD9A-like isoform X1; Belongs to the rad9 family.	0.543
LOC107798041	LOC107830644	A0A1S4AIF2	A0A1S4DK33	Cell cycle checkpoint control protein RAD9A-like; Belongs to the rad9 family.	Uncharacterized protein LOC107830644 isoform X1.	0.550
LOC107805580	LOC107798041	A0A1S4B873	A0A1S4AIF2	Uncharacterized protein LOC107805580 isoform X1.	Cell cycle checkpoint control protein RAD9A-like; Belongs to the rad9 family.	0.550
LOC107805580	LOC107806587	A0A1S4B873	A0A1S4BBK0	Uncharacterized protein LOC107805580 isoform X1.	Cell cycle checkpoint control protein RAD9A-like isoform X1; Belongs to the rad9 family.	0.550
LOC107805580	LOC107830644	A0A1S4B873	A0A1S4DK33	Uncharacterized protein LOC107805580 isoform X1.	Uncharacterized protein LOC107830644 isoform X1.	0.543
LOC107806587	LOC107798041	A0A1S4BBK0	A0A1S4AIF2	Cell cycle checkpoint control protein RAD9A-like isoform X1; Belongs to the rad9 family.	Cell cycle checkpoint control protein RAD9A-like; Belongs to the rad9 family.	0.543
LOC107806587	LOC107805580	A0A1S4BBK0	A0A1S4B873	Cell cycle checkpoint control protein RAD9A-like isoform X1; Belongs to the rad9 family.	Uncharacterized protein LOC107805580 isoform X1.	0.550
LOC107806587	LOC107830644	A0A1S4BBK0	A0A1S4DK33	Cell cycle checkpoint control protein RAD9A-like isoform X1; Belongs to the rad9 family.	Uncharacterized protein LOC107830644 isoform X1.	0.550
LOC107830644	LOC107798041	A0A1S4DK33	A0A1S4AIF2	Uncharacterized protein LOC107830644 isoform X1.	Cell cycle checkpoint control protein RAD9A-like; Belongs to the rad9 family.	0.550
LOC107830644	LOC107805580	A0A1S4DK33	A0A1S4B873	Uncharacterized protein LOC107830644 isoform X1.	Uncharacterized protein LOC107805580 isoform X1.	0.543
LOC107830644	LOC107806587	A0A1S4DK33	A0A1S4BBK0	Uncharacterized protein LOC107830644 isoform X1.	Cell cycle checkpoint control protein RAD9A-like isoform X1; Belongs to the rad9 family.	0.550
PCNA	LOC107778290	O82797	A0A1S3YP30	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.543
PCNA	LOC107779602	O82797	A0A1S3YU67	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.543