26 items (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpoB	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1070 aa)
	RPL8	60S ribosomal protein L8. (260 aa)
	rpl2-2	Ribosomal protein L2. (331 aa)
	rps12-2	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (123 aa)
	rpl2	Ribosomal protein L2. (274 aa)
	ycf1	Protein TIC 214. (1902 aa)
	rps15	30S ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. (87 aa)
	ndhF	NADH dehydrogenase subunit 5; Belongs to the complex I subunit 5 family. (740 aa)
	rps19-2	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (92 aa)
	rpl16-2	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (134 aa)
	petD	Cytochrome b6-f complex subunit 4; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (160 aa)
	petB	Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (215 aa)
	clpP	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (196 aa)
	rps18	Ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family. (101 aa)
	psbJ	Photosystem II reaction center protein J; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (40 aa)
	atpB	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (498 aa)
	ycf3	Photosystem I assembly protein Ycf3; Essential for the assembly of the photosystem I (PSI) complex. May act as a chaperone-like factor to guide the assembly of the PSI subunits. (168 aa)
	psbC	Photosystem II CP43 reaction center protein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbC subfamily. (461 aa)
	rps19	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (94 aa)
	rpl16	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (171 aa)
	rps12	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (125 aa)
	matK	Maturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily. (509 aa)
	rps16	Ribosomal protein S16. (85 aa)
	atpA	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (507 aa)
	atpI	ATP synthase CF0 A subunit. (247 aa)
	rpoC2	RNA polymerase beta'' subunit. (1388 aa)

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPL8	atpA	P25998	A0A140G1P7	60S ribosomal protein L8.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.878
RPL8	atpB	P25998	A0A140G1S2	60S ribosomal protein L8.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.820
RPL8	atpI	P25998	A0A140G1Q0	60S ribosomal protein L8.	ATP synthase CF0 A subunit.	0.890
RPL8	clpP	P25998	A0A140G1U2	60S ribosomal protein L8.	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	0.833
RPL8	matK	P25998	A0A140G1P3	60S ribosomal protein L8.	Maturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily.	0.772
RPL8	ndhF	P25998	A0A140G1W6	60S ribosomal protein L8.	NADH dehydrogenase subunit 5; Belongs to the complex I subunit 5 family.	0.795
RPL8	petB	P25998	A0A140G1U7	60S ribosomal protein L8.	Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.	0.829
RPL8	petD	P25998	A0A140G1U8	60S ribosomal protein L8.	Cytochrome b6-f complex subunit 4; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.	0.829
RPL8	psbC	P25998	A0A140G1Q8	60S ribosomal protein L8.	Photosystem II CP43 reaction center protein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbC subfamily.	0.768
RPL8	psbJ	P25998	A0A140G1T0	60S ribosomal protein L8.	Photosystem II reaction center protein J; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.	0.788
RPL8	rpl16	P25998	A0A0M3SGP4	60S ribosomal protein L8.	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.971
RPL8	rpl16-2	P25998	A0A140G1V4	60S ribosomal protein L8.	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.975
RPL8	rpl2-2	P25998	A0A1S4EUK8	60S ribosomal protein L8.	Ribosomal protein L2.	0.429
RPL8	rpoB	P25998	A0A140G1Q4	60S ribosomal protein L8.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.900
RPL8	rpoC2	P25998	A0A140G1Q2	60S ribosomal protein L8.	RNA polymerase beta'' subunit.	0.896
RPL8	rps12	P25998	A0A0M4JAF4	60S ribosomal protein L8.	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.970
RPL8	rps12-2	P25998	A0A140G1Y5	60S ribosomal protein L8.	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.970
RPL8	rps15	P25998	A0A140G1X6	60S ribosomal protein L8.	30S ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	0.922
RPL8	rps16	P25998	A0A140G1P4	60S ribosomal protein L8.	Ribosomal protein S16.	0.972
RPL8	rps18	P25998	A0A140G1T9	60S ribosomal protein L8.	Ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family.	0.902