20 items (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	ycf3	Photosystem I assembly protein Ycf3; Essential for the assembly of the photosystem I (PSI) complex. May act as a chaperone-like factor to guide the assembly of the PSI subunits. (168 aa)
	rpl16	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (171 aa)
	rps12	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (125 aa)
	rps16	Ribosomal protein S16. (85 aa)
	atpF	ATP synthase CF0 B subunit; Belongs to the ATPase B chain family. (184 aa)
	rpoC2	RNA polymerase beta'' subunit. (1388 aa)
	rpoC1	DNA-directed RNA polymerase subunit gamma; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily. (688 aa)
	clpP	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (196 aa)
	petB	Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (215 aa)
	petD	Cytochrome b6-f complex subunit 4; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (160 aa)
	rpl16-2	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (134 aa)
	ndhB	NADH-quinone oxidoreductase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (510 aa)
	ndhF	NADH dehydrogenase subunit 5; Belongs to the complex I subunit 5 family. (740 aa)
	ccsA	Cytochrome c biogenesis protein CcsA; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment. (313 aa)
	ndhA	NADH-quinone oxidoreductase subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. (363 aa)
	ycf1	Protein TIC 214. (1902 aa)
	rpl2	Ribosomal protein L2. (274 aa)
	rps12-2	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (123 aa)
	rpl2-2	Ribosomal protein L2. (331 aa)
	RPL8	60S ribosomal protein L8. (260 aa)

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPL8	atpF	P25998	A0A140G1P8	60S ribosomal protein L8.	ATP synthase CF0 B subunit; Belongs to the ATPase B chain family.	0.978
RPL8	ccsA	P25998	A0A140G1W8	60S ribosomal protein L8.	Cytochrome c biogenesis protein CcsA; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.	0.875
RPL8	clpP	P25998	A0A140G1U2	60S ribosomal protein L8.	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.	0.833
RPL8	ndhA	P25998	A0A140G1X4	60S ribosomal protein L8.	NADH-quinone oxidoreductase subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.	0.828
RPL8	ndhB	P25998	A0A140G1W1	60S ribosomal protein L8.	NADH-quinone oxidoreductase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.	0.798
RPL8	ndhF	P25998	A0A140G1W6	60S ribosomal protein L8.	NADH dehydrogenase subunit 5; Belongs to the complex I subunit 5 family.	0.795
RPL8	petB	P25998	A0A140G1U7	60S ribosomal protein L8.	Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.	0.829
RPL8	petD	P25998	A0A140G1U8	60S ribosomal protein L8.	Cytochrome b6-f complex subunit 4; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.	0.829
RPL8	rpl16	P25998	A0A0M3SGP4	60S ribosomal protein L8.	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.971
RPL8	rpl16-2	P25998	A0A140G1V4	60S ribosomal protein L8.	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.975
RPL8	rpl2-2	P25998	A0A1S4EUK8	60S ribosomal protein L8.	Ribosomal protein L2.	0.429
RPL8	rpoC1	P25998	A0A140G1Q3	60S ribosomal protein L8.	DNA-directed RNA polymerase subunit gamma; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily.	0.920
RPL8	rpoC2	P25998	A0A140G1Q2	60S ribosomal protein L8.	RNA polymerase beta'' subunit.	0.896
RPL8	rps12	P25998	A0A0M4JAF4	60S ribosomal protein L8.	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.970
RPL8	rps12-2	P25998	A0A140G1Y5	60S ribosomal protein L8.	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.970
RPL8	rps16	P25998	A0A140G1P4	60S ribosomal protein L8.	Ribosomal protein S16.	0.972
RPL8	ycf1	P25998	A0A140G1X7	60S ribosomal protein L8.	Protein TIC 214.	0.805
RPL8	ycf3	P25998	A0A140G1R4	60S ribosomal protein L8.	Photosystem I assembly protein Ycf3; Essential for the assembly of the photosystem I (PSI) complex. May act as a chaperone-like factor to guide the assembly of the PSI subunits.	0.812
atpF	RPL8	A0A140G1P8	P25998	ATP synthase CF0 B subunit; Belongs to the ATPase B chain family.	60S ribosomal protein L8.	0.978
atpF	ccsA	A0A140G1P8	A0A140G1W8	ATP synthase CF0 B subunit; Belongs to the ATPase B chain family.	Cytochrome c biogenesis protein CcsA; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.	0.918