STRINGSTRING
psbJ psbJ clpP clpP rpl36 rpl36 rps8 rps8 infA infA rps19-2 rps19-2 ndhF ndhF rpl32 rpl32 ccsA ccsA ndhD ndhD ycf1 ycf1 ycf2 ycf2 rps12-2 rps12-2 LOC107815813 LOC107815813 rpl2-2 rpl2-2 Ntabcob Ntabcob ycf3 ycf3 rps18 rps18 rps19 rps19 rps12 rps12 matK matK rps16 rps16 psaB psaB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
psbJPhotosystem II reaction center protein J; One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. (40 aa)
clpPATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (196 aa)
rpl36Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (37 aa)
rps8Ribosomal protein S8; Belongs to the universal ribosomal protein uS8 family. (134 aa)
infATranslation initiation factor IF-1, chloroplastic. (156 aa)
rps19-2Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (92 aa)
ndhFNADH dehydrogenase subunit 5; Belongs to the complex I subunit 5 family. (740 aa)
rpl32Ribosomal protein L32. (55 aa)
ccsACytochrome c biogenesis protein CcsA; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment. (313 aa)
ndhDNAD(P)H-quinone oxidoreductase chain 4; NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4 family. (500 aa)
ycf1Protein TIC 214. (1902 aa)
ycf2Protein Ycf2; Probable ATPase of unknown function. Its presence in a non- photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis; Belongs to the Ycf2 family. (2280 aa)
rps12-2Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (123 aa)
LOC107815813Cytochrome b. (299 aa)
rpl2-2Ribosomal protein L2. (331 aa)
NtabcobCytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain. The b-c1 complex mediates electron transfer from ubiquinol to cytochrome c. Contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis. (393 aa)
ycf3Photosystem I assembly protein Ycf3; Essential for the assembly of the photosystem I (PSI) complex. May act as a chaperone-like factor to guide the assembly of the PSI subunits. (168 aa)
rps18Ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family. (101 aa)
rps19Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (94 aa)
rps12Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (125 aa)
matKMaturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily. (509 aa)
rps16Ribosomal protein S16. (85 aa)
psaBPhotosystem I P700 chlorophyll a apoprotein A2; Belongs to the PsaA/PsaB family. (734 aa)
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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