STRINGSTRING
rpl2 rpl2 infA infA rpl16 rpl16 rps12 rps12 matK matK rps16 rps16 atpF atpF rpoC1 rpoC1 ycf3 ycf3 cemA cemA clpP clpP petB petB petD petD rpl16-2 rpl16-2 ndhF ndhF rpl32 rpl32 ccsA ccsA rps15 rps15 rps12-2 rps12-2 rpl2-2 rpl2-2 RPL8 RPL8
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl2Ribosomal protein L2. (274 aa)
infATranslation initiation factor IF-1, chloroplastic. (156 aa)
rpl16Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (171 aa)
rps12Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (125 aa)
matKMaturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily. (509 aa)
rps16Ribosomal protein S16. (85 aa)
atpFATP synthase CF0 B subunit; Belongs to the ATPase B chain family. (184 aa)
rpoC1DNA-directed RNA polymerase subunit gamma; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily. (688 aa)
ycf3Photosystem I assembly protein Ycf3; Essential for the assembly of the photosystem I (PSI) complex. May act as a chaperone-like factor to guide the assembly of the PSI subunits. (168 aa)
cemAEnvelope membrane protein; May be involved in proton extrusion. Indirectly promotes efficient inorganic carbon uptake. (229 aa)
clpPATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (196 aa)
petBCytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (215 aa)
petDCytochrome b6-f complex subunit 4; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. (160 aa)
rpl16-2Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (134 aa)
ndhFNADH dehydrogenase subunit 5; Belongs to the complex I subunit 5 family. (740 aa)
rpl32Ribosomal protein L32. (55 aa)
ccsACytochrome c biogenesis protein CcsA; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment. (313 aa)
rps1530S ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. (87 aa)
rps12-2Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (123 aa)
rpl2-2Ribosomal protein L2. (331 aa)
RPL860S ribosomal protein L8. (260 aa)
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.