12 items (Nicotiana tabacum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpl16-2	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (134 aa)
	psbB	Photosystem II CP47 reaction center protein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbB subfamily. (508 aa)
	rps19-2	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (92 aa)
	rps7	Ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family. (155 aa)
	ycf2	Protein Ycf2; Probable ATPase of unknown function. Its presence in a non- photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis; Belongs to the Ycf2 family. (2280 aa)
	rps12-2	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (123 aa)
	sdh3	Succinate dehydrogenase subunit 3. (108 aa)
	nad2	NADH dehydrogenase subunit 2. (488 aa)
	rps19	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (94 aa)
	rpl16	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (171 aa)
	rps12	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (125 aa)
	psaJ	Photosystem I reaction center subunit IX; May help in the organization of the PsaE and PsaF subunits. Belongs to the PsaJ family. (44 aa)

Your Current Organism:

Nicotiana tabacum

NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
nad2	psaJ	A0A172CKR7	A0A140G1T7	NADH dehydrogenase subunit 2.	Photosystem I reaction center subunit IX; May help in the organization of the PsaE and PsaF subunits. Belongs to the PsaJ family.	0.669
nad2	psbB	A0A172CKR7	A0A140G1U3	NADH dehydrogenase subunit 2.	Photosystem II CP47 reaction center protein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbB subfamily.	0.877
nad2	rpl16	A0A172CKR7	A0A0M3SGP4	NADH dehydrogenase subunit 2.	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.863
nad2	rpl16-2	A0A172CKR7	A0A140G1V4	NADH dehydrogenase subunit 2.	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.868
nad2	rps12	A0A172CKR7	A0A0M4JAF4	NADH dehydrogenase subunit 2.	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.793
nad2	rps12-2	A0A172CKR7	A0A140G1Y5	NADH dehydrogenase subunit 2.	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.832
nad2	rps19	A0A172CKR7	A0A0M3SGN8	NADH dehydrogenase subunit 2.	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family.	0.783
nad2	rps19-2	A0A172CKR7	A0A140G1V7	NADH dehydrogenase subunit 2.	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family.	0.818
nad2	rps7	A0A172CKR7	A0A140G1W2	NADH dehydrogenase subunit 2.	Ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family.	0.748
nad2	sdh3	A0A172CKR7	Q5M9U9	NADH dehydrogenase subunit 2.	Succinate dehydrogenase subunit 3.	0.751
psaJ	nad2	A0A140G1T7	A0A172CKR7	Photosystem I reaction center subunit IX; May help in the organization of the PsaE and PsaF subunits. Belongs to the PsaJ family.	NADH dehydrogenase subunit 2.	0.669
psaJ	psbB	A0A140G1T7	A0A140G1U3	Photosystem I reaction center subunit IX; May help in the organization of the PsaE and PsaF subunits. Belongs to the PsaJ family.	Photosystem II CP47 reaction center protein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbB subfamily.	0.949
psaJ	rpl16	A0A140G1T7	A0A0M3SGP4	Photosystem I reaction center subunit IX; May help in the organization of the PsaE and PsaF subunits. Belongs to the PsaJ family.	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.820
psaJ	rpl16-2	A0A140G1T7	A0A140G1V4	Photosystem I reaction center subunit IX; May help in the organization of the PsaE and PsaF subunits. Belongs to the PsaJ family.	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.838
psaJ	rps12	A0A140G1T7	A0A0M4JAF4	Photosystem I reaction center subunit IX; May help in the organization of the PsaE and PsaF subunits. Belongs to the PsaJ family.	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.718
psaJ	rps12-2	A0A140G1T7	A0A140G1Y5	Photosystem I reaction center subunit IX; May help in the organization of the PsaE and PsaF subunits. Belongs to the PsaJ family.	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.822
psaJ	rps19	A0A140G1T7	A0A0M3SGN8	Photosystem I reaction center subunit IX; May help in the organization of the PsaE and PsaF subunits. Belongs to the PsaJ family.	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family.	0.763
psaJ	rps19-2	A0A140G1T7	A0A140G1V7	Photosystem I reaction center subunit IX; May help in the organization of the PsaE and PsaF subunits. Belongs to the PsaJ family.	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family.	0.834
psaJ	rps7	A0A140G1T7	A0A140G1W2	Photosystem I reaction center subunit IX; May help in the organization of the PsaE and PsaF subunits. Belongs to the PsaJ family.	Ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family.	0.835
psaJ	ycf2	A0A140G1T7	A0A140G1Y2	Photosystem I reaction center subunit IX; May help in the organization of the PsaE and PsaF subunits. Belongs to the PsaJ family.	Protein Ycf2; Probable ATPase of unknown function. Its presence in a non- photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis; Belongs to the Ycf2 family.	0.869